SRR1780824_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780824_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88288
Sequences flagged as poor quality	0
Sequence length	76
%GC	87

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	58269	65.99877673069953	No Hit
CTTATACACATCTGACGCTGCCGACGAAACTCGGAGTGTAGATCTCGGTG	2879	3.260918811163465	No Hit
TCTTATACACATCTGACGCTGCCGACGAAACTCGGAGTGTAGATCTCGGT	336	0.38057267125770206	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAACTCGGAGTGTAGATCTCGG	141	0.1597046031170714	No Hit
ATACACATCTGACGCTGCCGACGAAACTCGGAGTGTAGATCTCGGTGGTC	119	0.13478615440376948	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	99	0.11213301920985864	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	94	0.10646973541138094	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	90	0.10193910837259876	No Hit
TCTTTATACACATCTGACGCTGCCGACGAAACTCGGAGTGTAGATCTCGG	89	0.10080645161290322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCGCT	15	0.002218584	69.99604	13
GCCGGCG	25	2.3795855E-4	55.996826	20
TAAAGGT	25	2.3795855E-4	55.996826	43
AAAAAGG	255	0.0	54.89885	70
GTAGATC	455	0.0	54.643253	38
AGTGTAG	455	0.0	53.873627	35
GATCTCG	455	0.0	53.873627	41
GTATCAT	430	0.0	53.717888	57
CATTAAA	430	0.0	53.717888	61
GTGTAGA	450	0.0	53.69405	36
TAGATCT	450	0.0	53.69405	39
ATCTCGG	450	0.0	53.663628	42
TCTCGGT	450	0.0	53.663628	43
CTCGGTG	450	0.0	53.663628	44
ATCATTA	425	0.0	53.52638	59
CGTATCA	445	0.0	53.480118	56
TCGGAGT	420	0.0	53.33031	31
GAGTGTA	440	0.0	53.292435	34
GTCGCCG	440	0.0	53.292435	51
TCGGTGG	440	0.0	53.292435	45