SRR1780823_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780823_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545579
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	37663	6.903308228505862	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	5831	1.0687728083375643	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5206	0.9542156131376024	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	2192	0.40177499500530633	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	2063	0.37813038991603415	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	1934	0.354485784826762	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	821	0.15048233161466992	No Hit
TCATATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	749	0.13728534272763432	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	651	0.1193227745202803	No Hit
CTTATACACATCTCCGCGCCCACGAGACTTATGAAAATCTCGTATGCCGT	614	0.11254098856444254	No Hit
CATATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	612	0.11217440553980267	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATT	20	7.925865E-5	69.99825	47
AGGGGGG	5195	0.0	64.0755	70
TGCCGTA	85	0.0	61.763172	45
GCCGTAT	65	0.0	59.229298	46
TATGCCG	6850	0.0	54.87455	43
GCCGTCT	6630	0.0	54.847805	46
CGTCTTC	6685	0.0	54.658325	48
CGTATGC	7000	0.0	54.64864	41
CCGTCTT	6610	0.0	54.643116	47
TCGTATG	7110	0.0	54.590767	40
ATGCCGT	6860	0.0	54.59048	44
ATCTCGT	7045	0.0	54.49829	37
CTCGTAT	7045	0.0	54.49829	39
TGCCGTC	6815	0.0	54.488743	45
TCTCGTA	7090	0.0	54.349846	38
GTATGCC	6925	0.0	54.229694	42
AATCTCG	7125	0.0	54.181103	36
ATATCGT	110	0.0	54.08956	37
TCTTCTG	6755	0.0	53.941425	50
CTTGAAA	6970	0.0	53.82936	57