SRR1780820_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780820_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	176660
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	798	0.4517151590626062	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	743	0.4205819087512736	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	594	0.33623910336239105	No Hit
CATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	280	0.1584965470395109	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	223	0.12623117853503904	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	195	0.11038152383108797	TruSeq Adapter, Index 10 (95% over 21bp)
TCATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	182	0.1030227555756821	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	25	2.8273043E-6	70.015564	48
ACTTCGG	15	0.002222315	69.99575	26
CGAATGC	30	1.0197073E-7	69.99575	41
ACGTATG	15	0.002222315	69.99575	40
CGACTTC	40	7.4365744E-7	52.511677	48
CGTTGTT	20	0.006944016	52.496815	46
TGACGAC	20	0.006944016	52.496815	45
CTTGACG	20	0.006944016	52.496815	27
GACGACT	20	0.006944016	52.496815	46
TCGAATG	35	2.0809866E-5	49.996967	40
AAACTCG	50	6.164555E-8	48.99703	36
GTCTTCA	75	1.4551915E-11	46.67705	49
TATGACG	45	1.6783433E-6	46.663837	43
CCTTGAG	45	1.6783433E-6	46.663837	47
AACTCGT	30	5.8675813E-4	46.663834	37
CAGCTTG	85	1.8189894E-12	45.304195	54
CGTATGA	40	4.5805948E-5	43.747345	41
CACGTAT	40	4.5805948E-5	43.747345	39
AGCTTGA	100	0.0	41.99745	55
AGGGGGG	370	0.0	40.684723	70