SRR1780816_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780816_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	31089
Sequences flagged as poor quality	0
Sequence length	76
%GC	71

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	11190	35.99343819357329	No Hit
CTTATACACATCTGACGCTGCCGACGAGAGGCTGCGTGTAGATCTCGGTG	256	0.8234423751166007	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34	0.10936344044517353	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCCTT	15	0.0022045171	70.0	44
TTCCTTT	15	0.0022045171	70.0	45
GATCTCG	45	2.5907866E-8	54.444443	41
TGTGTTA	20	0.0068888217	52.5	18
GGTGGTC	50	5.9437298E-8	49.000004	47
ATTAAAA	75	1.2732926E-11	46.666668	62
ATCTCGG	45	1.6330287E-6	46.666664	42
TCGGTGG	45	1.6330287E-6	46.666664	45
CGTATCA	60	4.6784407E-9	46.666664	56
GTGGTCG	45	1.6330287E-6	46.666664	48
CATTAAA	70	3.601599E-10	45.000004	61
TCATTAA	70	3.601599E-10	45.000004	60
CCGTATC	55	1.2582314E-7	44.545452	55
CGGTGGT	55	1.2582314E-7	44.545452	46
GCCGTAT	55	1.2582314E-7	44.545452	54
AGATCTC	55	1.2582314E-7	44.545452	40
TAGATCT	55	1.2582314E-7	44.545452	39
TGGTCGC	40	4.4918503E-5	43.75	49
CTCGGTG	40	4.4918503E-5	43.75	44
GTGTAGA	65	9.495125E-9	43.076923	36