SRR1780813_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780813_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	220053
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	3554	1.6150654615024562	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	1489	0.676655169436454	No Hit
CATATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	991	0.45034605299632363	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	971	0.4412573334605754	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	377	0.1713223632488537	No Hit
TCATATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	367	0.1667780034809796	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	357	0.16223364371310547	No Hit
CATAAACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	321	0.1458739485487587	No Hit
CTAATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	301	0.1367852290130105	No Hit
ATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTCTT	272	0.1236065856861756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCGTC	15	0.0022234237	69.99273	45
CGTAATC	20	7.927393E-5	69.97682	48
TTCGTAT	20	0.006941216	52.506477	28
ATACCGT	20	0.0069474597	52.494545	44
GCCGTAA	20	0.0069474597	52.494545	46
CCATTCG	20	0.0069474597	52.494545	25
TACGACG	20	0.006953708	52.482616	4
TCGAATG	95	0.0	51.58531	40
CCGACTT	95	0.0	51.57359	47
AACTCGT	105	0.0	50.006172	37
TGCCGAC	140	0.0	49.994804	45
AGGGGGG	875	0.0	48.79493	70
CAGCTTG	130	0.0	48.489567	54
AAACTCG	110	0.0	47.733166	36
GACGACT	30	5.8719935E-4	46.66182	46
GCCGTCA	115	0.0	45.64743	46
TATGACG	85	1.8189894E-12	45.289413	43
AATCACG	70	3.8198777E-10	45.00555	36
GCCGACT	125	0.0	44.795345	46
TGACGTC	55	1.3072167E-7	44.54083	45