SRR1780809_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780809_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557766
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52034	9.32900176776641	No Hit
CTTATACACATCTGACGCTGCCGACGAAAATTTGCGTGTAGATCTCGGTG	692	0.1240663647479409	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACATCG	35	0.0012549048	40.001995	5
CATCGCG	35	0.0012549048	40.001995	7
TCGTTGT	40	0.0024177765	35.001747	34
ATCGCGC	50	1.7106574E-4	34.995472	8
GTCGCCG	160	0.0	32.811195	51
CGGCTGA	55	2.9937652E-4	31.814066	26
TCTCGGT	190	0.0	31.314547	43
GACGGTT	45	0.004303637	31.115456	66
ACGGTTT	45	0.004303637	31.115456	67
TGGTCGC	170	0.0	30.881126	49
CGGTGGT	185	0.0	30.26907	46
TCGCCGT	165	0.0	29.701117	52
CTCGGTG	190	0.0	29.472515	44
TCGGTGG	215	0.0	29.301163	45
CGTATCA	180	0.0	29.170738	56
CGCCGTA	175	0.0	28.00391	53
CATCGTT	50	0.00720548	28.001398	32
ACATCGC	50	0.00720548	28.001398	6
GTAGATC	205	0.0	27.315989	38
GCCGTAT	180	0.0	27.226023	54