SRR1780809_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780809_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557766
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	26218	4.700537501389471	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	4949	0.8872896519328894	No Hit
CATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	3299	0.5914666724038395	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	1468	0.2631928084537243	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1239	0.2221361646281774	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	841	0.15078007623268538	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	708	0.12693495121610138	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	653	0.11707418523179972	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	3915	63.47569	70
TGCCGAC	100	55.99663	45
ATCGTAT	210	53.34447	39
CCGTCTT	4930	51.396496	47
CGTCTTC	4900	51.34945	48
GCCGTCT	4980	51.231853	46
TATGCCG	5420	51.205402	43
TCGTATG	5530	51.086617	40
CGTATGC	5380	51.01437	41
CTCGTAT	5370	50.848606	39
TCTCGTA	5405	50.77841	38
GTATGCC	5480	50.77249	42
ATCTCGT	5375	50.736176	37
TGCCGTC	5340	50.530666	45
ATGCCGT	5460	50.38158	44
TATCGTA	225	49.788174	38
GATCTCG	5555	49.722355	36
GGATCTC	5565	49.691456	35
GGGATCT	5700	49.6066	34
TGGGATC	5680	49.596443	33