SRR1780804_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780804_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	329334
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	25143	7.634498715589645	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	4760	1.4453412037627453	No Hit
CATATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	3285	0.9974676164623149	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1864	0.5659907571037306	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1386	0.42084935050738764	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	960	0.2914973856328226	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	792	0.24048534314707865	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	508	0.15425069989736861	No Hit
CAAATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	450	0.13663939951538562	No Hit
TCATATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	437	0.13269203908494112	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	399	0.1211536009036419	TruSeq Adapter, Index 9 (95% over 21bp)
CATAAACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	368	0.111740664492582	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTGCGC	15	0.0022239503	69.99635	26
CGTCCTG	15	0.0022239503	69.99635	34
AGGGGGG	4040	0.0	64.80845	70
CGAATGC	75	0.0	60.67272	41
AAGCCGT	125	0.0	58.796944	44
GACGACT	25	2.3891382E-4	55.99709	46
ATCGTAT	145	0.0	55.522785	39
ATATCGT	110	0.0	54.096302	37
AGAGACG	65	3.6379788E-12	53.84335	23
GCCGTCT	5175	0.0	53.832943	46
CCGTCTT	5105	0.0	53.81698	47
TCTTCTG	5050	0.0	53.779377	50
CGTCTTC	5170	0.0	53.681923	48
GATCTCG	5410	0.0	53.508114	36
AGATCTC	5370	0.0	53.4504	35
GTCTTCT	5115	0.0	53.369656	49
CTTCTGC	5135	0.0	53.366257	51
ATCTCGT	5375	0.0	53.335556	37
TCTCGTA	5440	0.0	53.277378	38
TCGTATG	5520	0.0	53.20277	40