SRR1780803_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780803_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	751466
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	24145	3.2130528859589123	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	4368	0.5812638229806804	No Hit
CATATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	2794	0.37180657541392426	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1525	0.20293665980896008	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1500	0.1996098293202886	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	1220	0.16234932784716807	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	3445	61.56977	70
GCCGTCA	725	56.481094	46
TATGCCG	4765	53.46811	43
CCGTCAT	825	53.452972	47
AAGCCGT	190	53.41948	44
CGTATGC	4465	53.223515	41
TCGTATG	4690	53.058136	40
GCCGTCT	3760	53.05695	46
CCGTCTT	3760	52.777702	47
TGCCGTA	425	52.70433	45
CGTCTTA	485	52.675354	48
GTATGCC	4845	52.58525	42
TGCCGTC	4415	52.557907	45
ATGCCGT	4840	52.42614	44
CGTCTTC	3425	52.418327	48
CTCGTAT	4780	52.3555	39
TCTCGTA	4980	51.869392	38
ATCTCGT	5015	51.577187	37
CGTCATC	710	51.262684	48
GTCTTCT	3215	50.617226	49