SRR1780800_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780800_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73647
Sequences flagged as poor quality	0
Sequence length	76
%GC	90

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52253	70.95061577525222	No Hit
CTTATACACATCTGACGCTGCCGACGAAAATTTGCGTGTAGATCTCGGTG	851	1.1555121050416175	No Hit
TCTTATACACATCTGACGCTGCCGACGAAAATTTGCGTGTAGATCTCGGT	115	0.15615028446508342	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	105	0.142571998859424	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	93	0.1262780561326327	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	87	0.11813108476923703	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	85	0.11541542764810515	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGGCGC	15	0.0022132848	70.02651	12
TTGGGCG	15	0.0022132848	70.02651	2
GCGCTGC	15	0.0022132848	70.02651	15
TGGCGCT	15	0.0022132848	70.02651	13
GTGCGCG	20	7.8646925E-5	70.02651	4
CCGTAAC	15	0.002219264	69.97894	56
GCCGTAA	15	0.002219264	69.97894	55
CTTGGGC	25	2.3718596E-4	56.02121	1
TCTGGCG	20	0.006915957	52.519886	11
GCGCGTC	20	0.006915957	52.519886	6
CTGCAGG	20	0.006915957	52.519886	1
GACGCCG	20	0.006934587	52.48421	52
CGTAACA	20	0.006934587	52.48421	57
CGGCTGG	20	0.006934587	52.48421	9
CGTCTGG	20	0.006934587	52.48421	9
CCGTATC	140	0.0	44.98646	55
GCCGTAT	140	0.0	44.98646	54
GTATCAT	150	0.0	44.319996	57
TATCATT	150	0.0	44.319996	58
GGCGCTG	40	4.5426204E-5	43.76657	14