SRR1780800_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780800_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73647
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	26714	36.2730321669586	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	4899	6.652002118212555	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	3072	4.171249338058577	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1584	2.1508004399364533	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	1431	1.9430526701698643	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	800	1.0862628484527543	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	614	0.8337067361874889	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	568	0.7712466224014556	No Hit
ATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTCTT	391	0.5309109671812836	TruSeq Adapter, Index 7 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGACGT	385	0.522763995817888	No Hit
TCATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	366	0.4969652531671351	No Hit
CAAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	303	0.41142205385148073	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTAGTATGCCGT	287	0.38969679688242564	No Hit
CATAAACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	286	0.38833896832185966	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCACGTATGCCGT	191	0.2593452550680951	No Hit
CTTATACACATCTCCGCGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	182	0.24712479802300164	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTAAGCCGT	175	0.23761999809904003	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATATCGTATGCCGT	175	0.23761999809904003	No Hit
CTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	164	0.22268388393281466	No Hit
CCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	163	0.2213260553722487	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	149	0.2023164555243255	No Hit
CTTATACAAATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	134	0.18194902711583635	No Hit
CTTTACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	130	0.17651771287357257	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGGGTCATCTCGTATGCCGT	129	0.17515988431300664	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGACGT	126	0.1710863986313088	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAGGGTCATCTCGTATGCCGT	118	0.16022377014678127	No Hit
CTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	115	0.15615028446508342	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	115	0.15615028446508342	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTAGTATGCCG	105	0.142571998859424	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCACGTATGCCGT	100	0.1357828560565943	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGA	98	0.1330671989354624	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATGGGTCATCTCGTATGCCGT	97	0.13170937037489647	No Hit
CTTATAAACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	96	0.13035154181433053	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGACATCTCGTATGCCGT	96	0.13035154181433053	No Hit
CTTATACACATCTCCGAGCCAACGAGACCTTGGGTCATCTCGTATGCCGT	89	0.12084674189036892	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTAGTATGCCGT	87	0.11813108476923703	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCAGT	86	0.11677325620867109	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTAAGCCGT	82	0.11134194196640733	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGACG	78	0.10591062772414356	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAACAGG	25	2.8105678E-6	70.017	66
CACGTAA	20	7.8699886E-5	70.017	39
TCAGAAT	20	7.8699886E-5	70.017	53
GCTTGTA	20	7.8699886E-5	70.017	56
ACCTTGA	20	7.8699886E-5	70.017	27
ATGCAGA	25	2.8105678E-6	70.017	44
TCGTAAT	20	7.8699886E-5	70.017	40
AATATGC	20	7.8699886E-5	70.017	51
CAGAATG	20	7.8699886E-5	70.017	54
ATCGTAA	35	3.6434358E-9	70.017	39
AGCCGTA	20	7.8699886E-5	70.017	45
CTTGAGT	25	2.8105678E-6	70.017	29
ACAGGGG	25	2.8105678E-6	70.017	68
GCCGAAT	25	2.8105678E-6	70.017	46
AAGCCGA	25	2.8105678E-6	70.017	44
CTTCTGA	35	3.6434358E-9	70.017	51
GCCCTCA	15	0.0022144786	70.01699	46
AATCAGT	15	0.0022144786	70.01699	44
TGCCGAA	30	1.00930265E-7	70.01699	45
TTCTGAT	30	1.00930265E-7	70.01699	52

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content