SRR1780798_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780798_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	962063
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	32921	3.421917275687767	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	5226	0.543207669352215	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	3111	0.3233675965087526	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	1787	0.18574667147577653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	4595	0.0	61.62357	70
CGTCTTC	6010	0.0	54.852013	48
GCCGTCT	6135	0.0	54.478794	46
CCGTCTT	6070	0.0	54.2578	47
CGTATGC	6385	0.0	54.04771	41
TCGTATG	6470	0.0	54.040886	40
TATGCCG	6350	0.0	54.009293	43
CTCGTAT	6400	0.0	53.871952	39
TCTCGTA	6445	0.0	53.495804	38
CTTGAAA	6355	0.0	53.259212	57
ATCTCGT	6450	0.0	53.07446	37
ATGCCGT	6480	0.0	53.036537	44
GTATGCC	6490	0.0	53.00599	42
TCTTCTG	6075	0.0	53.003292	50
TGCCGTC	6480	0.0	52.92852	45
GTCTTCT	6130	0.0	52.750626	49
CTGCTTG	6085	0.0	52.636803	54
CATCTCG	6550	0.0	52.584797	36
ATCGTAT	140	0.0	52.504642	39
ACGTATT	20	0.006952123	52.49918	47