SRR1780794_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780794_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397425
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	4700	1.1826130716487389	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCGT	1114	0.28030445996099895	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCG	632	0.1590237151663836	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATTCCGT	493	0.12404856262187834	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	407	0.10240925960873119	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACTT	20	7.919492E-5	70.00491	47
TACGTAA	55	0.0	63.632812	46
TAAGACG	65	0.0	59.220016	43
TCTCGGA	60	1.8189894E-12	58.330082	38
CGTATGC	840	0.0	57.489563	41
TCGGATG	55	3.6379788E-11	57.262325	40
ATCTCGT	1215	0.0	57.03386	37
TCTCGTA	1175	0.0	56.294735	38
CTCGTAT	1030	0.0	56.06484	39
TTACGTA	50	9.804353E-10	55.99688	45
GGCCCGT	25	2.3912718E-4	55.98983	1
CATCTCG	1375	0.0	55.742348	36
TCGTATG	930	0.0	55.688812	40
GCCGTCA	480	0.0	55.413578	46
TATGCCG	1100	0.0	55.353584	43
CCGTCTT	450	0.0	55.226093	47
AGGGGGG	1110	0.0	54.231213	70
CCGTCAT	540	0.0	53.800068	47
TGCCGTC	860	0.0	53.717937	45
GCCGTCT	450	0.0	53.663677	46