SRR1780793_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780793_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43669
Sequences flagged as poor quality	0
Sequence length	76
%GC	90

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29621	67.8307266023953	No Hit
CTTATACACATCTGACGCTGCCGACGAGCCACGTCGTGTAGATCTCGGTG	153	0.35036295770455017	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	77	0.17632645583823764	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	56	0.1282374224278092	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	53	0.1213675605120337	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	49	0.11220774462433304	No Hit
GGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGG	47	0.10762783668048272	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGG	45	0.1030479287366324	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGGC	20	7.843616E-5	70.0	19
CTGCCGG	15	0.0022105542	70.0	18
CATTAAA	45	3.7107384E-10	62.222218	61
TGGTCGC	40	1.0355507E-8	61.25	49
GTATCAT	40	1.0355507E-8	61.25	57
TATCATT	40	1.0355507E-8	61.25	58
ATCATTA	40	1.0355507E-8	61.25	59
TCATTAA	40	1.0355507E-8	61.25	60
GTCGCCG	35	2.9096736E-7	60.0	51
CCGTATC	35	2.9096736E-7	60.0	55
TCGCCGT	35	2.9096736E-7	60.0	52
CGTATCA	35	2.9096736E-7	60.0	56
GCCGTAT	35	2.9096736E-7	60.0	54
GGTCGCC	35	2.9096736E-7	60.0	50
GCCGGCG	30	8.246387E-6	58.333332	20
CGCCGTA	30	8.246387E-6	58.333332	53
CCGGCGG	30	8.246387E-6	58.333332	21
ACGTCGT	50	9.458745E-10	55.999996	31
GTCGTGT	50	9.458745E-10	55.999996	33
TCGTGTA	50	9.458745E-10	55.999996	34