SRR1780792_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780792_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331385
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	17222	5.196976326629148	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	2777	0.8379980988880005	No Hit
CTAATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	1671	0.5042473256182386	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1137	0.343105451363218	No Hit
CATATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	592	0.17864417520406778	No Hit
TCATATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	435	0.13126725711785384	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	404	0.12191257902439762	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	398	0.12010199616759962	TruSeq Adapter, Index 9 (95% over 21bp)
CTTATACACATCTCCGCGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	385	0.11617906664453732	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	347	0.10471204188481677	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTCG	20	7.922166E-5	69.99668	25
TCGGAAG	15	0.0022239217	69.99667	44
CTCGGAA	15	0.0022239217	69.99667	43
AGGGGGG	2505	0.0	60.37464	70
ATCGTAA	30	8.369343E-6	58.330563	39
TGCCGTA	25	2.3891054E-4	55.997345	45
TGCCGAC	100	0.0	55.997345	45
CCGACTT	70	0.0	54.997395	47
CGACTTC	65	3.6379788E-12	53.851727	48
GATCTCG	3400	0.0	53.526875	36
GCCGACT	85	0.0	53.52687	46
ATCTCGT	3330	0.0	53.49596	37
CGTCTTC	3290	0.0	53.090603	48
TATGCCG	3410	0.0	53.061996	43
TCGTATG	3450	0.0	52.95401	40
CCGTCTT	3280	0.0	52.92432	47
CGTATGC	3425	0.0	52.82961	41
TCTCGTA	3420	0.0	52.804512	38
CTGCTTG	3225	0.0	52.749645	54
CTCGTAT	3455	0.0	52.67478	39