SRR1780789_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780789_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	264715
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	8786	3.3190412330241963	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	2038	0.7698845928640236	No Hit
CTAATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	1579	0.5964905653249721	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	677	0.25574674650095386	No Hit
ATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTCTT	670	0.2531023931397919	No Hit
TCATATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	606	0.22892544812345353	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	453	0.17112743894376972	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	377	0.14241731673686797	No Hit
CATATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	369	0.13939519860982566	No Hit
CTTATACACATCTCCGAGCCCACGAGACACAAATAAATCTCGTATGCCGT	282	0.10652966397824075	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTCTA	15	0.0022214374	70.012474	1
AGGGGGG	1320	0.0	58.60892	70
TGACGAC	30	8.362893E-6	58.332706	45
CTCCGGT	25	2.3877918E-4	55.999397	7
CGTTGAA	25	2.3877918E-4	55.999397	42
GACGACT	25	2.3877918E-4	55.999397	46
TCCGGTC	25	2.3877918E-4	55.999397	8
GTTTGAC	20	0.0069464524	52.499435	28
CGTCTTA	60	8.367351E-11	52.499435	48
ATACCGT	20	0.0069464524	52.499435	44
TACCGTC	20	0.0069464524	52.499435	45
AACTCGT	75	0.0	51.33278	37
CGACTTC	90	0.0	50.555016	48
CGTCTAC	105	0.0	49.999462	48
ATGACGA	35	2.083215E-5	49.999462	44
CATCTCG	85	0.0	49.411232	36
CCGACTT	80	0.0	48.12448	47
CTCGTAT	2520	0.0	47.77726	39
TATGCCG	2490	0.0	47.509525	43
CTTTATA	140	0.0	47.49949	2