SRR1780787_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780787_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	629617
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	31872	5.062125069685221	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	4986	0.7919100024300487	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	2982	0.47362126499125656	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	1724	0.273817257157923	No Hit
CTTATACACATCTCCGCGCCCACGAGACTTATGAAAATCTCGTATGCCGT	1029	0.16343269003219418	No Hit
CATATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	1028	0.16327386331690535	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	772	0.12261422420296783	RNA PCR Primer, Index 19 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	737	0.11705528916785919	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	728	0.11562584873025983	No Hit
TCATATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	711	0.1129257945703499	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	80	0.0	65.62023	48
AGGGGGG	3945	0.0	62.178253	70
ATCGTAT	95	0.0	58.952454	39
ACTCTCG	100	0.0	56.00038	36
ATACCGT	20	0.006950397	52.500355	44
GCCGTCT	5680	0.0	52.37296	46
CGTCTTC	5650	0.0	52.27939	48
TATGCCG	5965	0.0	52.21335	43
GTCTTCA	215	0.0	52.089237	49
CGTATGC	6055	0.0	52.07301	41
CCGTCTT	5635	0.0	52.050045	47
TCGTATG	6160	0.0	51.923923	40
CTTGAAA	5935	0.0	51.89589	57
TCTCGTA	6145	0.0	51.77415	38
CTCGTAT	6105	0.0	51.773506	39
TGCCGTC	5900	0.0	51.61052	45
TCTTCTG	5685	0.0	51.530693	50
ATGCCGT	5940	0.0	51.439743	44
ATCTCGT	6105	0.0	51.368084	37
CTGCTTG	5720	0.0	51.34184	54