SRR1780783_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780783_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	209119
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	12529	5.9913255132245276	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	3487	1.6674716309852284	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	1080	0.5164523548792792	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	460	0.2199704474485819	No Hit
CTTATACACATCTCCGCGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	424	0.20275536895260593	No Hit
ATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTCTT	358	0.17119439170998332	RNA PCR Primer, Index 14 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGACGT	271	0.12959128534470804	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGATCCCATCTCGTATGCCGT	243	0.11620177984783782	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTCGCG	15	0.0022201238	70.0177	11
CGCTAAA	15	0.0022222318	70.00095	10
TGACGTA	15	0.002224341	69.984215	45
AACGGTT	65	0.0	59.231575	27
AGGGGGG	1510	0.0	59.12091	70
ACGGTTC	60	1.8189894E-12	58.33413	28
CTTTATA	60	1.8189894E-12	58.320183	2
GTCTTCA	165	0.0	55.152267	49
GGATCCC	90	0.0	54.44519	30
CCGTCAT	240	0.0	53.946167	47
ATCGTAT	85	0.0	53.517345	39
ACCGGAT	105	0.0	53.33406	27
GCCGTCA	245	0.0	52.845222	46
GTTCCAC	20	0.0069306176	52.525845	64
GCGAGAC	20	0.0069371806	52.51328	11
TAACCGA	20	0.0069371806	52.51328	11
AACTTGG	20	0.006943748	52.500717	28
TTGCGAG	20	0.006943748	52.500717	9
GAACGGT	60	8.367351E-11	52.500713	26
AGCCGAC	20	0.0069503197	52.488163	45