SRR1780782_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780782_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	187797
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	1963	1.0452776135934014	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCG	606	0.32268886084442244	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCGT	573	0.30511669515487466	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATTCCGT	270	0.14377226473266347	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGACGT	263	0.14004483564700182	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCG	217	0.11555030165551101	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGCA	15	0.0022224674	69.99628	31
CGATTTT	15	0.0022224674	69.99628	22
AATGCCG	25	2.8326358E-6	69.99628	43
ATACCGT	20	7.9134676E-5	69.99627	44
GACGTAT	35	2.9635703E-7	59.996803	46
ATCGTAT	25	2.3864984E-4	55.997017	39
AGGGGGG	550	0.0	54.738934	70
GCCGTAT	85	0.0	53.52656	46
ACAACGC	20	0.0069444897	52.497204	27
AGCAATT	20	0.0069444897	52.497204	2
TAGACTT	20	0.0069444897	52.497204	25
ATATCGT	20	0.0069444897	52.497204	37
AATCTCG	20	0.0069444897	52.497204	36
GTCCGGT	20	0.0069444897	52.497204	28
GCGATTT	20	0.0069444897	52.497204	21
ATAACGA	20	0.0069444897	52.497204	44
GTCCAGA	20	0.0069444897	52.497204	2
GACGAAT	20	0.0069444897	52.497204	46
AATACGT	20	0.0069444897	52.497204	44
GCATATC	20	0.0069444897	52.497204	35