SRR1780779_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780779_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	273360
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	13700	5.011706175007316	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	3660	1.3388937664618086	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1043	0.38154814164471756	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	906	0.33143107989464443	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGACGT	512	0.18729880011706176	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTAAGCCGT	484	0.17705589698565993	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	385	0.14083991805677493	No Hit
CTTATACACATCTCCGCGCCCACGAGACCATCCTGTATCTCGTATGCCGT	318	0.11633011413520632	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATTCCGT	300	0.10974539069359088	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATCCTGTATCTCGTATGCCGT	289	0.10572139303482588	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	20	7.921414E-5	69.9936	46
CCGTCAA	20	7.921414E-5	69.9936	47
TAACTCG	60	0.0	64.17254	36
AACTCGT	55	0.0	63.642185	37
AGGGGGG	1340	0.0	61.397446	70
AATCTCG	80	0.0	61.255608	36
GCCGTAA	150	0.0	55.99488	46
GAATCTC	105	0.0	53.33821	35
TTCCGTA	20	0.00694891	52.495197	45
TCCGTCA	40	7.4678974E-7	52.495197	46
ATAACTC	20	0.00694891	52.495197	43
TAATCCG	20	0.00694891	52.495197	43
GCCGTCA	590	0.0	52.19862	46
CCGTAAT	170	0.0	51.46588	47
CGTCATA	150	0.0	51.32864	48
TGCCGTA	260	0.0	51.14917	45
GCATGAA	720	0.0	50.074028	56
CGACTTC	35	2.0843898E-5	49.99543	48
GCCGTAT	140	0.0	49.99543	46
CGTATGC	2565	0.0	49.809624	41