SRR1780778_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780778_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	212712
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	12762	5.999661514159991	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	3816	1.7939749520478394	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	1005	0.47246981834593255	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	383	0.1800556621159126	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT	335	0.15748993944864417	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGATAAAATCTCGTATGCCGT	310	0.14573695889277521	No Hit
CTTATACACATCTCCGCGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	234	0.11000789800293355	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGAGAT	15	0.0022214574	70.00752	27
AGGGGGG	1520	0.0	61.962013	70
ACGAGTT	35	2.9621697E-7	60.00645	27
GAGACGA	60	1.8189894E-12	58.339603	24
ACGTATG	55	3.6379788E-11	57.265423	40
CGAGTTA	45	2.6922862E-8	54.437496	28
CGAATGC	90	0.0	54.437496	41
ACGCGAA	20	0.0069413367	52.505646	27
TTATCGG	20	0.0069413367	52.505646	25
AAAACGG	40	7.449744E-7	52.505646	67
AAACACG	20	0.006947795	52.493298	36
CATCGTT	20	0.006947795	52.493298	32
TGCCGTA	20	0.006947795	52.493298	45
CAGACTA	20	0.006947795	52.493298	1
AATCACG	55	2.2737368E-9	50.902596	36
TCGAATG	90	0.0	50.549103	40
ATCGTAT	70	7.2759576E-12	49.993618	39
GCCGACA	35	2.0832596E-5	49.993618	46
CGTCTAC	65	1.8371793E-10	48.466747	48
GCCGTCT	2600	0.0	47.513165	46