SRR1780771_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780771_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	96045
Sequences flagged as poor quality	0
Sequence length	76
%GC	83

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	57351	59.712634702483214	No Hit
CTTATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGGTG	4694	4.887292415013795	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGGT	555	0.5778541308761518	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGG	302	0.31443594148576187	No Hit
ATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGGTGGTC	211	0.2196886875943568	No Hit
TCTTTATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGG	151	0.15721797074288094	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	124	0.1291061481597168	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	107	0.1114061117184653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGGTAG	15	0.002218416	70.00208	1
AAGATAC	15	0.002218416	70.00208	34
AAGTGTA	15	0.002218416	70.00208	34
GGTGGTA	15	0.002218416	70.00208	47
CCCTCAG	15	0.002218416	70.00208	48
CCGGCGA	15	0.002218416	70.00208	21
CAGTATC	30	8.320478E-6	58.33507	55
AAAAAGG	380	0.0	56.185886	70
GCCGGCG	50	9.658834E-10	56.001667	20
AAAGGGG	25	2.379621E-4	56.001667	69
TCTTTAT	25	2.379621E-4	56.001667	1
CTTTATA	25	2.3857603E-4	55.9725	2
CGCTGGC	20	0.0069176303	52.52894	16
GAAAGGG	20	0.0069176303	52.52894	68
GTAGCCG	20	0.0069176303	52.52894	51
GTGTCAG	20	0.006931915	52.501564	57
TCGGCGG	20	0.006931915	52.501564	52
TAGCCGT	20	0.006931915	52.501564	52
TGAAGTG	20	0.006931915	52.501564	32
CGAATCA	20	0.006931915	52.501564	56