SRR1780769_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780769_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545337
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	22164	4.064275851445986	No Hit
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	7094	1.3008469991949931	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6966	1.2773752743716271	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	4855	0.8902751876362689	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	1513	0.2774431223261946	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	1283	0.23526736678420868	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	578	0.10598950740551255	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTATT	20	7.924833E-5	70.0001	40
AGGGGGG	3745	0.0	61.220646	70
CGTATGA	205	0.0	54.63422	41
CGTCTTA	110	0.0	54.09098	48
TCGTTGT	65	3.6379788E-12	53.84129	34
TGACGTC	240	0.0	52.500072	45
ACGTATG	60	8.367351E-11	52.500072	40
GACGATC	40	7.476974E-7	52.500072	29
ATCGTAT	100	0.0	52.50007	39
CCGTCTT	4905	0.0	51.80435	47
CGTCTTC	4995	0.0	51.71178	48
CATCTCG	5255	0.0	51.550972	36
GCCGTCT	5015	0.0	51.50555	46
TATGCCG	5155	0.0	51.46466	43
TCGTATG	5415	0.0	51.449745	40
ATCTCGT	5240	0.0	51.431362	37
CGTATGC	5265	0.0	51.38658	41
CATCGTT	75	0.0	51.3334	32
CTCGTAT	5355	0.0	51.307255	39
TCTCGTA	5260	0.0	51.23581	38