SRR1780763_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780763_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	622430
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	37924	6.092893980045949	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9673	1.554070337226676	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	7750	1.2451199331651752	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	6630	1.0651800202432402	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	2383	0.3828542968687242	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	811	0.13029577623186545	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	806	0.12949247304917821	RNA PCR Primer, Index 19 (95% over 23bp)
CTTATACACATCTCCGCGCCCACGAGACTTATGAAAATCTCGTATGCCGT	742	0.11921019231078195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	5375	0.0	61.412193	70
TGACGAC	35	2.9745206E-7	59.997723	45
GCCGTAT	55	3.6379788E-11	57.270557	46
TGCCGAC	145	0.0	55.515137	45
ATATCGT	140	0.0	55.006752	37
GCCGACT	145	0.0	53.101433	46
ATCGTAT	140	0.0	52.506447	39
CGAACTT	20	0.0069493786	52.50223	29
TATGCCG	7060	0.0	51.90313	43
CCGTCTT	6775	0.0	51.76188	47
CGTATGC	7135	0.0	51.754128	41
CGTCTTC	6855	0.0	51.71941	48
AATCTCG	7265	0.0	51.6994	36
ATCTCGT	7200	0.0	51.679955	37
TCGTATG	7280	0.0	51.63681	40
GCCGTCT	6875	0.0	51.568954	46
CTCGTAT	7195	0.0	51.326664	39
GTATGCC	7120	0.0	51.31828	42
TCTCGTA	7275	0.0	51.291523	38
ATGCCGT	7125	0.0	51.233147	44