SRR1780762_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780762_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5115
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	594	11.612903225806452	No Hit
CTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTG	34	0.6647116324535679	No Hit
ATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGTC	27	0.5278592375366569	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGG	13	0.2541544477028348	No Hit
TCTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGT	8	0.15640273704789834	No Hit
GCGTCAGATGTGTATAAGAGACAGAGATTGCGCTCCGGATGGCGACGCCG	6	0.11730205278592376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCAATG	25	2.1717482E-4	55.999996	27
CGGTGGT	25	2.1717482E-4	55.999996	43
GGTGGTC	25	2.1717482E-4	55.999996	44
CCAATGT	20	0.0065637315	52.499996	28
AATGTGT	20	0.0065637315	52.499996	30
TGTGTAG	20	0.0065637315	52.499996	32
CTCGGTG	30	5.3432374E-4	46.666664	41
ACCCAAT	30	5.3432374E-4	46.666664	26
GTGGTCG	30	5.3432374E-4	46.666664	45
GAGACCC	30	5.3432374E-4	46.666664	23
TGGTCGC	35	0.0011419009	39.999996	46
TCGGTGG	35	0.0011419009	39.999996	42
CATTAAA	35	0.0011419009	39.999996	58
TCGCCGT	35	0.0011419009	39.999996	49
TATCATT	35	0.0011419009	39.999996	58
CGACGAG	35	0.0011419009	39.999996	19
CGAGACC	35	0.0011419009	39.999996	22
GACCCAA	35	0.0011419009	39.999996	25
CGCCGTA	35	0.0011419009	39.999996	50
GTCGCCG	40	0.002201299	34.999996	48