SRR1780762_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780762_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5115
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	131	2.5610948191593352	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	122	2.3851417399804498	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	19	0.37145650048875856	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	18	0.3519061583577713	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	16	0.3128054740957967	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14	0.27370478983382207	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	11	0.21505376344086022	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTAATGAATCTCGTATGCCGT	11	0.21505376344086022	No Hit
CTTATAAACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	9	0.17595307917888564	No Hit
TCTTATACACATCTGACGCCTGTCTCTTATACACATCTCCGAGCCCACGA	6	0.11730205278592376	No Hit
CTTATACACATCTCCGAGCCCACGAGACTATAATGCATCTCGTATGCCGT	6	0.11730205278592376	No Hit
GGTACACAAGCACCCCACGGTGCCGTTCATACAGCGCCGCGCATGCCCAC	6	0.11730205278592376	No Hit
ATTATAAACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	6	0.11730205278592376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTTGAA	40	6.111095E-7	52.499996	56
TTGAAAA	40	6.111095E-7	52.499996	58
CTTGAAA	40	6.111095E-7	52.499996	57
TCTGCTT	35	1.8072582E-5	49.999996	53
TGCTTGA	35	1.8072582E-5	49.999996	55
CTGCTTG	35	1.8072582E-5	49.999996	54
TTCTGCT	30	5.3432374E-4	46.666664	52
CCGTCTT	30	5.3432374E-4	46.666664	47
GTCTTCT	30	5.3432374E-4	46.666664	49
GCCGTCT	30	5.3432374E-4	46.666664	46
CTTCTGC	30	5.3432374E-4	46.666664	51
ATGCCGT	40	3.980808E-5	43.749996	44
TGAAAAA	50	2.8469658E-6	42.0	59
TATGCCG	35	0.0011419009	39.999996	43
AAGGGGG	35	0.0011419009	39.999996	70
AAAAGGG	35	0.0011419009	39.999996	68
TCTTCTG	35	0.0011419009	39.999996	50
CGTCTTC	35	0.0011419009	39.999996	48
TGCCGTC	45	7.97786E-5	38.888885	45
CGTATGC	45	7.97786E-5	38.888885	41