FastQCFastQC Report
Wed 25 May 2016
SRR1780760_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780760_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1933
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1638.432488360062079No Hit
ATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGTC231.189860320744956No Hit
CTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTG40.20693222969477496No Hit
GCTCAGAGCGGTCAAGTTAAGTTGAAATCTCCTAAGTGTAAGTTGGGTGC40.20693222969477496No Hit
TTACTATTCTGCCTAGCAAACTCAAACTACGAGCGCACTCACAGTCGCAT30.1551991722710812No Hit
CCTCATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCA30.1551991722710812No Hit
ACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGTCGC30.1551991722710812No Hit
CCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAA30.1551991722710812No Hit
GCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTA30.1551991722710812No Hit
ATATACTAGTATTCCTAGAAGTGAGATGGTAAATGCTAGTATAATATTTA30.1551991722710812No Hit
AGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAG30.1551991722710812No Hit
GGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAAT30.1551991722710812No Hit
TCTTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGG30.1551991722710812No Hit
AGAGGAGGGTGGATGGAATTAAGGGTGTTAGTCATGTTAGCTTGTTTCAG30.1551991722710812No Hit
TCTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGT30.1551991722710812No Hit
AGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGA20.10346611484738748No Hit
AGCGTCAGATGTGTATAAGAGACAGTGCCTCAGGATACTCCTCAATAGCC20.10346611484738748No Hit
CTAGTAGGCTCCCTTCCCCTACTCATCGCACTGATTTACACTCACAACAC20.10346611484738748No Hit
TATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGT20.10346611484738748No Hit
ATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAA20.10346611484738748No Hit
ATGTAGCCCATTTCTTGCCACCTCATGGGCTACACCTTGACCTAACGTCT20.10346611484738748No Hit
CTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC20.10346611484738748No Hit
CTGCAACTTCATTTTTGTTTTTCTGTTCTTTTCACAGGGAAAGCTTCTTC20.10346611484738748No Hit
AGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAG20.10346611484738748No Hit
CTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATT20.10346611484738748No Hit
CTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGG20.10346611484738748No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT20.10346611484738748No Hit
TCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC20.10346611484738748No Hit
TCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCT20.10346611484738748No Hit
GTATATAATACATACTTTGGGTACTTTCATATTATATGTACAGTATATAA20.10346611484738748No Hit
CGCGTGAGCCACCGCGTCCGGCCAACATTTGGTATTTTTTTTAGTTATAT20.10346611484738748No Hit
GCCCGTGAAGAGGCGGGCATGACACAGCAAGACGAGAAGACCCTATGGAG20.10346611484738748No Hit
GACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCT20.10346611484738748No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG20.10346611484738748No Hit
GGGTATAACCAACATTTTCGGGGTATGGGCCCGATAGCTTATTTAGCTGA20.10346611484738748No Hit
GCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATA20.10346611484738748No Hit
GGTATATTGTTGAAGAGGATAGCTATTAGAAGGATTATGGATGCGGTTGC20.10346611484738748No Hit
TTCCAGTAGTCTGTTAGACGAGCAGAACGGTCTTCAACAAGTCTGTCTCT20.10346611484738748No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA20.10346611484738748No Hit
GTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATC20.10346611484738748No Hit
TAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTA20.10346611484738748No Hit
GTCCACATGTGTGCTCCTCTATGTGCAGTCTAAAATTTTGGATCTGTTTC20.10346611484738748No Hit
GTTTTGATGTGGATTGGGTTTTTATGTACTACAGGTGGTCAAGTATTTAT20.10346611484738748No Hit
TACTTGTTCTGTCCTTTCTCTGAGCAAGGCCTTTGCTTTCATTGGTTTCT20.10346611484738748No Hit
GGTTCGGGAAGACGCGTGGCCCTGCCTGCCACCCACCGGAAGCTGTCTCT20.10346611484738748No Hit
GAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTT20.10346611484738748No Hit
GTGACAGAGCGAGACCCCATCAAGAAAAACAAAAAAACAAAACAAAAAAA20.10346611484738748No Hit
CAGATGGTGGATGATATGCATTTATAAATTCTTTTTAAGATTCTAGGGAG20.10346611484738748No Hit
GATAGAAATGTATATGTCCAACAACATTACACACAATGTTACAGGCTGTT20.10346611484738748No Hit
AACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTACTACCA20.10346611484738748No Hit
ATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTC20.10346611484738748No Hit
AGTTTAAGTTGAGTAGTAGGAATGCGGTAGTAGTTAGGATAATATAAATA20.10346611484738748No Hit
GGATATGAGGTGTGAGCGATATACTAGTATTCCTAGAAGTGAGATGGTAA20.10346611484738748No Hit
AAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTA20.10346611484738748No Hit
AGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAG20.10346611484738748No Hit
GAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAA20.10346611484738748No Hit
CAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAAC20.10346611484738748No Hit
GCTAGTAGGGCTAGGCCCACCGCTGCTTCGCAGGCGGCAAAGACTAGTAT20.10346611484738748No Hit
CCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATA20.10346611484738748No Hit
GGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACT20.10346611484738748No Hit
CTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACAT20.10346611484738748No Hit
TGTCTTTGTGGTTTGTAGAGAATAGTCAACGGTCGGCGAACATCAGTGGG20.10346611484738748No Hit
CTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCT20.10346611484738748No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)