FastQCFastQC Report
Wed 25 May 2016
SRR1780755_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780755_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6724
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG310.4610350981558596No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT90.1338488994646044No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT150.002138375869.9253837
TCTCGTA150.002138375869.9253838
TATCTCG150.002138375869.9253836
CGTATGC150.002138375869.9253841
TCGTATG150.002138375869.9253840
TTGGTAG150.002138375869.9253867
CTCGTAT150.002138375869.9253839
TGAAAAA150.002138375869.9253859
GAAAAAA200.00668382552.4440360
GAGCCCA200.00668382552.4440316
CGAGCCC200.00668382552.4440315
CCGAGCC200.00668382552.4440314
Produced by FastQC (version 0.11.5)