SRR1780749_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780749_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34113
Sequences flagged as poor quality	0
Sequence length	76
%GC	89

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	23015	67.46694808430803	No Hit
CTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCGGTG	368	1.0787676252455076	No Hit
TCTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCGGT	52	0.152434555741213	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51	0.14950312197695892	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	46	0.13484595315568845	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39	0.11432591680590977	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGGCGC	15	0.0022063868	70.0	12
CGAATCA	20	0.0068946173	52.500004	56
CCGAATC	20	0.0068946173	52.500004	55
CATTAAA	60	4.7020876E-9	46.666664	61
ATTAAAA	60	4.7020876E-9	46.666664	62
ATCATTA	60	4.7020876E-9	46.666664	59
TCATTAA	60	4.7020876E-9	46.666664	60
AGATCTC	60	4.7020876E-9	46.666664	40
TTAAAAA	70	3.619789E-10	45.0	63
TAGATCT	55	1.2631426E-7	44.545452	39
GTAGATC	65	9.542418E-9	43.076927	38
ATCTCGG	65	9.542418E-9	43.076927	42
GATCTCG	65	9.542418E-9	43.076927	41
GGTCGCC	65	9.542418E-9	43.076927	50
GTGGTCG	60	2.5022018E-7	40.833332	48
CTCGGTG	70	1.8357241E-8	40.0	44
TGGTCGC	55	6.5101704E-6	38.181816	49
GTATCAT	55	6.5101704E-6	38.181816	57
CCGTATC	55	6.5101704E-6	38.181816	55
TCGCCGT	55	6.5101704E-6	38.181816	52