FastQCFastQC Report
Wed 25 May 2016
SRR1780748_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780748_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8418
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG730.8671893561416013No Hit
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT280.3326205749584224No Hit
CTCTTATACACATCTCCGAGCCCACTGTCTCTTATACCTGTCTCTTATAC110.13067236873366594No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)