FastQCFastQC Report
Wed 25 May 2016
SRR1780747_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780747_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20478
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG870.4248461763844125No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT230.11231565582576424No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAG150.002193701770.044
GGGCGAA207.744183E-569.999991
TCTGCTC200.006855283452.49999617
CATAACC200.006855283452.49999620
Produced by FastQC (version 0.11.5)