SRR1780746_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780746_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	160917
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14143	8.789003026404917	No Hit
CTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCGGTG	509	0.31631213607014796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAAGG	15	0.002221419	70.0	2
AACCGTG	20	0.0069412305	52.5	8
TAACCGT	20	0.0069412305	52.5	7
GCGGCTA	20	0.0069412305	52.5	46
GCTCGGT	20	0.0069412305	52.5	12
CGTTGAC	30	5.8642577E-4	46.666664	33
TGGTCGC	75	7.4942363E-10	42.000004	49
TCGCCGT	85	5.638867E-11	41.17647	52
ACAGGGC	35	0.001252553	40.000004	8
GGTTAGA	35	0.001252553	40.000004	1
CGGTGGT	80	1.4097168E-9	39.375	46
GATCTCG	90	1.03682396E-10	38.88889	41
TCGGTGG	85	2.5502231E-9	37.058823	45
GCCGTAT	85	2.5502231E-9	37.058823	54
CGCCGTA	95	1.8553692E-10	36.842106	53
GTCGCCG	105	1.2732926E-11	36.666664	51
CTCGGTG	90	4.458343E-9	35.000004	44
TCTCGGT	90	4.458343E-9	35.000004	43
GTAGATC	100	3.2196112E-10	35.0	38
GCGGGCA	40	0.0024132757	35.0	14