SRR1780743_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780743_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37011
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	356	0.9618761989678744	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	266	0.7187052497906028	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	96	0.25938234578908975	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	64	0.17292156385939314	No Hit
CTTTACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	52	0.14049877063575694	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	46	0.12428737402393883	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	40	0.10807597741212072	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTAAGT	15	0.002208048	69.99865	12
GGCCAAG	15	0.002208048	69.99865	33
TCAGCAT	15	0.002208048	69.99865	53
ATCTGAT	15	0.002208048	69.99865	26
CTCGTAA	25	2.3610416E-4	55.998924	39
CTTAAGC	20	0.0068997713	52.49899	52
TGGAGGG	20	0.0068997713	52.49899	24
CGTATGA	20	0.0068997713	52.49899	41
TTTCGTG	20	0.0068997713	52.49899	29
CAGCATG	20	0.0068997713	52.49899	54
TGACGTC	20	0.0068997713	52.49899	45
AGTATAC	20	0.0068997713	52.49899	39
AAGCCGT	20	0.0068997713	52.49899	44
ACCAGCA	20	0.0068997713	52.49899	38
TTGGTCA	20	0.0068997713	52.49899	21
TAAATGT	20	0.0068997713	52.49899	25
GCCACCG	20	0.0068997713	52.49899	39
ATTTCGT	20	0.0068997713	52.49899	28
ATGCTTG	30	5.806089E-4	46.665764	54
CAATTTC	30	5.806089E-4	46.665764	26