SRR1780742_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780742_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135722
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3130	2.306184701080149	No Hit
CTTATACACATCTGACGCTGCCGACGAGAACGGCTGTGTAGATCTCGGTG	266	0.1959888595806133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGTCTA	20	0.0069399104	52.498062	30
TGCTCGT	20	0.0069399104	52.498062	23
CGTGTGT	20	0.0069399104	52.498062	27
GCTCGTG	20	0.0069399104	52.498062	24
GTCGCCG	45	1.6751674E-6	46.66495	51
CTCGGTG	50	3.459043E-6	41.99845	44
ATCTCGG	55	6.657345E-6	38.180412	42
CGGTGGT	55	6.657345E-6	38.180412	46
GTAGATC	60	1.2059261E-5	35.01161	38
AAAGGGT	40	0.002408024	35.01161	35
TCGCCGT	50	1.7029297E-4	34.99871	52
GCCGTAT	50	1.7029297E-4	34.99871	54
ACTGCCG	40	0.002412384	34.998707	69
ACACTGC	40	0.002412384	34.998707	67
GATCTCG	65	2.085718E-5	32.318413	41
TCTCGGT	65	2.0909865E-5	32.306503	43
CTGTGTA	65	2.0909865E-5	32.306503	34
CGCCGTA	55	2.980305E-4	31.81701	53
TCGGTGG	55	2.980305E-4	31.81701	45
TGGTCGC	55	2.980305E-4	31.81701	49