SRR1780726_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780726_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38676
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	573	1.4815389388768228	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	338	0.8739269831420001	Illumina PCR Primer Index 9 (95% over 21bp)
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	86	0.2223601199710415	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	60	0.15513496742165683	No Hit
TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT	47	0.12152239114696453	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT	40	0.1034233116144379	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGTC	20	0.0069015697	52.5	16
TGTCAAA	20	0.0069015697	52.5	12
AATTATT	40	0.0023907197	35.0	42
TTAGTAT	45	0.0042576385	31.111109	3
CGTCTTC	165	0.0	29.69697	48
TCTCGTA	155	1.8189894E-12	29.35484	38
GATCTCG	155	1.8189894E-12	29.35484	36
TATGCCG	180	0.0	29.166664	43
CGTATGC	180	0.0	29.166664	41
TCGTATG	180	0.0	29.166664	40
CCGTCTT	170	0.0	28.82353	47
GTCTTCT	170	0.0	28.82353	49
ATCTCGT	160	1.8189894E-12	28.4375	37
ATGCCGT	185	0.0	28.378378	44
TAAGATC	150	2.7284841E-11	28.0	33
GCCGTCT	175	0.0	28.0	46
TCTTCTG	175	0.0	28.0	50
GTGGGGA	50	0.00712583	27.999998	4
TGCCGTC	190	0.0	27.631578	45
AGATCTC	165	3.6379788E-12	27.575758	35