SRR1780725_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780725_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492138
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	14072	2.8593605858519355	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	5002	1.0163815840272443	TruSeq Adapter, Index 9 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	2297	0.4667390041004759	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	1142	0.23204873429810338	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	1063	0.2159963262336987	No Hit
TATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCT	581	0.118056317536951	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTATC	40	4.118665E-7	38.49938	44
GCGAACT	75	0.0	38.12884	28
GCTTCTA	35	7.28761E-6	37.709843	23
CCGTCTT	525	0.0	36.875595	44
AAAGCGA	80	0.0	35.74579	25
CAGGTAC	25	0.0023469417	35.21374	11
TTGTATC	25	0.0023528007	35.195854	33
CCATTGA	25	0.0023528007	35.195854	29
CGAACTA	85	0.0	33.643097	29
TAGGGCG	55	1.3662248E-7	32.012493	9
GCCGTCT	605	0.0	31.63585	43
AGCGAAC	100	0.0	30.796373	27
GGCCACG	30	0.005727954	29.34777	1
GAATACG	45	4.053885E-5	29.344788	11
AGAGTCT	30	0.0057308013	29.344786	15
TATCGTC	30	0.0057308013	29.344786	13
ACGTCTG	30	0.0057422	29.332857	42
GTAAACA	30	0.0057422	29.332857	36
ATCGGAA	90	1.6370905E-11	29.32988	27
TATCGGA	90	1.6370905E-11	29.32988	26