FastQCFastQC Report
Wed 25 May 2016
SRR1780724_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780724_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2954
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAATAAAGGTGGATGCGACAATGGATTTTACATAATGGGGGTATGAGTT110.3723764387271496No Hit
CTTATACACATCTGACGCTGCCTGTCTCTTATACACCTGTCTCTTATACA60.2031144211238998No Hit
AAGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGGGCACCGATTAT40.13540961408259986No Hit
TCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCC40.13540961408259986No Hit
CGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAG30.1015572105619499No Hit
ACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAG30.1015572105619499No Hit
TTGTGGGGTTTTCTTCTAAGCCTTCTCCTATTTATGGGGGTTTAGTATTG30.1015572105619499No Hit
AATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCT30.1015572105619499No Hit
AACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCT30.1015572105619499No Hit
GTATAGAGAGGTAGAGTTTTTTTCGTGATAGTGGTTCACTGGATAAGTGG30.1015572105619499No Hit
CCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCAT30.1015572105619499No Hit
CCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAAC30.1015572105619499No Hit
CGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACC30.1015572105619499No Hit
GTGTGGGGAGGAATGGGGTGGGTTTTGTATGTTCAAACTGTCATTTTATT30.1015572105619499No Hit
TTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGGTTG30.1015572105619499No Hit
GCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATC30.1015572105619499No Hit
GTTTAAATTAGAATCTTAGCTTTGGGTGCTAATGGTGGAGTTAAAGACTT30.1015572105619499No Hit
TCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTT30.1015572105619499No Hit
CTAAATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAG30.1015572105619499No Hit
CCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCG30.1015572105619499No Hit
TCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAG30.1015572105619499No Hit
CTTCATATGAGATTGTTTGGGCTACTGCTCGCAGTGCGCCGATCAGGGCG30.1015572105619499No Hit
CGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCC30.1015572105619499No Hit
ATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATAT30.1015572105619499No Hit
CTATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCAC30.1015572105619499No Hit
GTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGAGCGATGGTGAGAGCTA30.1015572105619499No Hit
CTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGC30.1015572105619499No Hit
CTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAG30.1015572105619499No Hit
GGGTTAGGATGAGTGGGAAGAAGAAAGAGAGGAAGTAAAGTTTAATTATG30.1015572105619499No Hit
TCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAA30.1015572105619499No Hit
CTCTTATACACATCTGACGCTGCCTGTCTCTTATACACATCTGACGCTGC30.1015572105619499No Hit
ACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAAT30.1015572105619499No Hit
AGGTTATATGGGTTTAATAGTTTTTTTAATTTATTTAGGGGGAATGATGG30.1015572105619499No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)