SRR1780722_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780722_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13628
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	341	2.502201350161432	Illumina PCR Primer Index 10 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	80	0.587026709715292	No Hit
CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	50	0.36689169357205753	Illumina PCR Primer Index 10 (95% over 21bp)
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	40	0.293513354857646	No Hit
TATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCT	18	0.13208100968594072	Illumina PCR Primer Index 10 (95% over 22bp)
CCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAG	17	0.12474317581449956	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	17	0.12474317581449956	Illumina PCR Primer Index 10 (95% over 21bp)
ACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTTCT	16	0.1174053419430584	Illumina PCR Primer Index 10 (96% over 25bp)
ATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGTCTT	15	0.11006750807161726	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCATT	15	0.0021778026	70.0	41
TATGTCT	20	0.006805975	52.5	49
CTCCATA	20	0.006805975	52.5	2
GTATAGG	20	0.006805975	52.5	1
TGCCGTC	40	0.002336626	35.0	42
CCGTCTT	40	0.002336626	35.0	44
CTGCTTG	40	0.002336626	35.0	51
GCCGTCT	40	0.002336626	35.0	43
CGTCTTC	40	0.002336626	35.0	45
GTATGCC	45	0.004161877	31.111109	39
TATGCCG	45	0.004161877	31.111109	40
ATGCCGT	45	0.004161877	31.111109	41
TCTTCTG	45	0.004161877	31.111109	47
CTTCTGC	45	0.004161877	31.111109	48
TTCTGCT	50	0.0069665187	27.999998	49
TCTGCTT	50	0.0069665187	27.999998	50
TCTCGTA	50	0.0069665187	27.999998	35
GTCTTCT	50	0.0069665187	27.999998	46
CGTATGC	50	0.0069665187	27.999998	38
TCGTATG	50	0.0069665187	27.999998	37