SRR1780703_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780703_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636765
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	12799	2.0100036905294734	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	5141	0.8073622136895087	Illumina PCR Primer Index 11 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	1563	0.24545947091941298	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	1368	0.21483592848225014	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	1232	0.19347797067992115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTCAT	25	0.0023534636	35.195415	26
CCGTCTT	640	0.0	34.714226	44
GCCGTCT	715	0.0	31.072874	43
ATTAGCC	30	0.0057378397	29.338724	3
ACTGGAC	30	0.0057378397	29.338724	3
GACGGTG	30	0.0057466566	29.329512	7
ACTGTGC	30	0.0057466566	29.329512	8
CGTGCGA	55	4.94308E-6	28.009548	10
ATTCGGT	55	4.94308E-6	28.009548	11
ATGCCGT	2160	0.0	28.005611	44
CAATTCG	55	4.9521514E-6	28.002947	9
TTCGTAG	55	4.961237E-6	27.996351	35
TGCCGTC	800	0.0	27.771381	42
CTGGCTA	40	7.0144574E-4	27.509378	10
TCGACAT	40	7.0338085E-4	27.496416	29
TTCGACA	40	7.0338085E-4	27.496416	28
ATGATTC	185	0.0	27.34779	40
AGCGGAT	185	0.0	27.34779	35
GATAATT	65	5.9061676E-7	27.086157	11
TCCACGA	65	5.9061676E-7	27.086157	12