SRR1780702_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780702_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40546
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	1166	2.875746066196419	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	480	1.183840576135747	Illumina PCR Primer Index 9 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	167	0.41187786711389535	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	128	0.3156908203028659	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	105	0.2589651260296947	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT	71	0.17510975188674593	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT	56	0.1381147338825038	No Hit
TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT	48	0.1183840576135747	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	48	0.1183840576135747	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	44	0.10851871947911015	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTGAAT	15	0.0022093963	70.0	51
GTGTTGA	15	0.0022093963	70.0	11
GCGAAGT	15	0.0022093963	70.0	32
GGCGAAG	15	0.0022093963	70.0	31
CGGGAGG	15	0.0022093963	70.0	38
TTAAGGC	15	0.0022093963	70.0	27
CCTCACG	15	0.0022093963	70.0	33
ATTTTGT	25	2.3635043E-4	56.000004	38
TGTTGTC	20	0.006903951	52.5	57
GTCAAAA	20	0.006903951	52.5	61
TGTCAAA	20	0.006903951	52.5	60
GGCCTCA	20	0.006903951	52.5	31
ACGGGAG	20	0.006903951	52.5	37
AGTTGGA	20	0.006903951	52.5	33
TTTGGCC	20	0.006903951	52.5	28
TTGGCCT	20	0.006903951	52.5	29
CGGTTGT	20	0.006903951	52.5	55
CTCACGG	20	0.006903951	52.5	34
TTAAAAT	20	0.006903951	52.5	21
GTTGTCA	20	0.006903951	52.5	58