SRR1780700_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780700_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37277
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	748	2.0065992435013547	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	351	0.9415993776323202	RNA PCR Primer, Index 30 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	104	0.27899240818735416	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	59	0.1582745392601336	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT	57	0.15290930064114602	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	47	0.12608310754620813	No Hit
CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC	42	0.11267001099873916	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	41	0.10998739168924537	No Hit
CCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAG	40	0.1073047723797516	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGTA	20	0.0068996106	52.5	38
GGATATC	20	0.0068996106	52.5	35
AGAGTAT	20	0.0068996106	52.5	8
ATCGTAT	20	0.0068996106	52.5	39
TGTATGG	20	0.0068996106	52.5	2
ATATCGT	20	0.0068996106	52.5	37
ATGAGCG	20	0.0068996106	52.5	18
TTGAAAA	235	0.0	49.148937	58
TCTTCTG	250	0.0	47.6	50
TGCTTGA	240	0.0	46.666664	55
CTTGAAA	240	0.0	46.666664	57
TTCTGCT	250	0.0	46.2	52
TCTGCTT	250	0.0	46.2	53
CTGCTTG	250	0.0	46.2	54
CTTCTGC	250	0.0	46.2	51
CCGTCTT	260	0.0	45.769234	47
GTCTTCT	260	0.0	45.769234	49
CGTCTTC	260	0.0	45.769234	48
GCCGTCT	270	0.0	44.074074	46
GTATGCC	255	0.0	43.92157	42