SRR1780695_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780695_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	415989
Sequences flagged as poor quality	0
Sequence length	50
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGT	14774	3.5515362185057775	No Hit
ATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTCTT	6575	1.5805706400890407	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCC	2793	0.671411984451512	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCG	1741	0.4185206820372654	No Hit
TATACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTCT	561	0.13485933522280638	No Hit
CTTTACACATCTCCGAGCCCACGAGACCCAAATAAATCTCGTATGCCGTC	483	0.11610883941642687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	30	1.3007755E-4	36.661358	25
CCGTCTT	860	0.0	36.068882	44
GGGCTAA	25	0.0023513078	35.199135	44
CGCGTGT	25	0.0023513078	35.199135	42
ACGAGTG	25	0.0023526952	35.194904	5
CACTTGC	25	0.0023526952	35.194904	32
CGAAGGA	25	0.0023526952	35.194904	4
GCCGTCT	920	0.0	33.477436	43
GAGTCCC	35	3.2147256E-4	31.427797	9
TATCTTG	35	3.2169934E-4	31.42402	29
TTTTCGA	35	3.2169934E-4	31.42402	21
ATCTACG	30	0.005721212	29.353785	1
CCGCTTT	30	0.0057313126	29.343195	12
CTTATAT	30	0.0057313126	29.343195	12
ATCGTAT	30	0.005738054	29.336138	39
TCGAGAT	30	0.0057414267	29.332611	9
TGCCGTC	1050	0.0	29.332611	42
CGGGTTT	30	0.0057448014	29.329086	31
GTCTAGA	30	0.0057448014	29.329086	32
CGTCCGC	30	0.0057448014	29.329086	24