SRR1780690_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780690_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61345
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	1181	1.9251772760616188	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	519	0.8460347216562067	RNA PCR Primer, Index 48 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	128	0.20865596218110682	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	86	0.14019072459043116	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	80	0.1304099763631918	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	78	0.12714972695411197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTCG	20	7.868989E-5	70.00001	23
CGATTAG	20	7.868989E-5	70.00001	52
CGTTCGG	20	7.868989E-5	70.00001	24
TTGCGAT	20	7.868989E-5	70.00001	49
GCGATTA	20	7.868989E-5	70.00001	51
TTCGGTA	20	7.868989E-5	70.00001	26
GTAAGCA	20	7.868989E-5	70.00001	30
ATGCCAT	20	7.868989E-5	70.00001	43
TCGGTAA	20	7.868989E-5	70.00001	27
CCATTGC	20	7.868989E-5	70.00001	46
GGGTACA	25	2.809018E-6	70.0	62
GGTAAGC	25	2.3731633E-4	55.999996	29
GTTCGGT	25	2.3731633E-4	55.999996	25
TGCGATT	25	2.3731633E-4	55.999996	50
ATTGCGA	25	2.3731633E-4	55.999996	48
CGGTAAG	25	2.3731633E-4	55.999996	28
GGTACAA	20	0.0069208397	52.500004	63
CCAGGGA	20	0.0069208397	52.500004	4
GTTAGTG	20	0.0069208397	52.500004	30
TCAATCC	20	0.0069208397	52.500004	37