SRR1780681_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780681_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	207267
Sequences flagged as poor quality	0
Sequence length	50
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	2091	1.0088436654170707	No Hit
ATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGTCTT	863	0.41637115411522335	TruSeq Adapter, Index 3 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCC	362	0.17465394877139148	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	328	0.15824998673208954	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCG	308	0.148600597297206	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGG	305	0.14715318888197348	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCCT	219	0.10566081431197441	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGATTC	50	1.3387762E-9	39.59457	40
CCGTCTT	135	0.0	35.84694	44
TGCGCCA	25	0.0023443326	35.212162	12
TATTGCG	25	0.0023498922	35.195175	9
CGCCTAT	25	0.0023498922	35.195175	34
ATTGGCG	65	4.620233E-10	33.849678	21
AGCGGAT	60	7.952622E-9	32.995476	35
AGTCATC	35	3.211322E-4	31.424263	7
ATACTTT	35	3.211322E-4	31.424263	39
GAAGGTA	70	1.02591E-9	31.424263	29
GCCGTCT	135	0.0	30.95872	43
ATGATCT	30	0.005731256	29.336388	23
TGAAGGT	75	2.1482265E-9	29.329313	28
GTCCGCG	30	0.0057380213	29.32931	37
ATCGCCT	30	0.0057380213	29.32931	32
GCGCCAT	80	4.256435E-9	27.509502	16
TGCCGGC	40	7.017979E-4	27.49623	42
ATGCCGT	415	0.0	27.03244	44
GCGGATG	75	6.9630914E-8	26.396381	36
TATGCCG	525	0.0	25.97739	43