FastQCFastQC Report
Wed 25 May 2016
SRR1780672_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780672_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75100
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCAAG150.002217881669.9913433
CAAGGGT150.002217881669.9913436
CCAAGGG150.002217881669.9913435
GACTAGA150.002217881669.9913416
GTTGACT200.00693027752.49350754
TCGTTCG200.00693027752.49350723
CGTTCGG200.00693027752.49350724
GTAATCA200.00693027752.49350756
ACAGGAC200.00693027752.49350719
TTCGGTA200.00693027752.49350726
AAGGGTC200.00693027752.49350737
TACAGGA200.00693027752.49350718
TTACCTA200.00693027752.49350730
TATACCG200.00693027752.4935076
CTGGTGT305.8477424E-446.66089211
ATATAGC350.001249049739.9950526
CATTTTT350.001249049739.99505214
GTGTAAG400.002305973635.301211
GTGTGGA400.002406571334.9956711
GACTGGT400.002406571334.995679
Produced by FastQC (version 0.11.5)