FastQCFastQC Report
Wed 25 May 2016
SRR1780671_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780671_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135
Sequences flagged as poor quality0
Sequence length50
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTGACGCTGCCGACGAATCTGGCGGGGTAGATCGCGGTG10.7407407407407408No Hit
AACTAATACACCAGTCTTGTAAACCGAAGATGAAAACCTTTTTCCAAGGA10.7407407407407408No Hit
TAGTGGATAGAGAACTATATTTTTAATGAACGTATAAAAAGTCACACAGA10.7407407407407408No Hit
GTGTGCCGCCCGGTGGCGTGGAATGCCTGTCTCTTATACACATCTGACGC10.7407407407407408No Hit
CAATTCCTATGTCTATCCTTACAGGAAAAAACCCGTTTCCACCGAAGGCC10.7407407407407408No Hit
GCCTGCTTCCCCGTGAGTCTTTGGCAGGTCCCTCACACCTGCCAGGTCTA10.7407407407407408No Hit
CTTTACACATATGACGCTGACGTCGTAGGATGGAGTGTAATTCTAGGGTG10.7407407407407408No Hit
GCCGTCTACTTCGCGGACGTGGAGGGCTTCGCATACAAGGAGATCGCCGA10.7407407407407408No Hit
GGGGCAGGGGATATACTGGATCCATATCGAACGAGGGCCCACGAAGTCAG10.7407407407407408No Hit
GTCGAGGCCCTGCGTGCCGAAGCGACGGCGGACGTCCCGCGGGACCAGAT10.7407407407407408No Hit
GTCCTCGGCGGCGGAGACATGGCGCGATCCTGGGGACTTCCACCAACATT10.7407407407407408No Hit
ATACCAGATTATGAAAATAACCAAAATGGAAAAATTTGATGTAGAAGATA10.7407407407407408No Hit
GTACAGGCCGCTTCCGTCGGGACTGCGGCCGATCATCGAGCAGTATGTTG10.7407407407407408No Hit
ATACACATCTGACGCTGCCGACGAGGGCCGGTGGGTAGATCTCGGGGGTC10.7407407407407408No Hit
CCTGAACGGGATTGTGGAGGGTATGAAGGGGCTGTTTTTTACCTATGACG10.7407407407407408No Hit
CAGCCGACCCGCGCGCGGCGACGACCACGTGCCCGCGAGATAGGCGCTGT10.7407407407407408No Hit
GGTGGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCTGTCTC10.7407407407407408No Hit
TGACGGTGAAACTCGGAGTCCGAGCCTCGGCAGGAAAGGGTGTTGAGAGA10.7407407407407408No Hit
GGGTGACAGAGGGAGACTCCGTCTCAAAATAAATAAATAAATAAATAAAT10.7407407407407408No Hit
GGTCTCCTCCCCTAATTGGGCTGATGTGCCTGGTGCTGCTAGGGGGAGTT10.7407407407407408No Hit
GGAGAAGCCATGGCAGGGTTAAAGGTAGTGCTATGAGGGAGGAGGTGAGT10.7407407407407408No Hit
GCCGGCGTGGTGTCCGGGGAAGGGCGCGGGGCCGCGGTCAGGGACGGGGC10.7407407407407408No Hit
CAGGCCTCGTCTGAGGAGCGTTATGGAGTGGAAGTGACATCACCTGGCTA10.7407407407407408No Hit
GTTGAGTTGTGGTAGTCAAAATGTAATAATTATTAGTAGTAAGGCTAGGA10.7407407407407408No Hit
GTCCAGGGACGCCACGGACATGCCGGGCTGGATCCAGGCTGTCTCTTATA10.7407407407407408No Hit
ACCATATACCAATGATGGCGCGACGTAACACGAGAAACCACATAACACGA10.7407407407407408No Hit
TCTTATACACATCTGACGCTGCCGACGAATGAGCATGTGGAGGTGTTGGG10.7407407407407408No Hit
GCCGAGGCTTGATCGTGCGATCATGACACGTGGCCATGCTATGATTTATC10.7407407407407408No Hit
ACTCTTGGGTCCCGCAGTCGCAGGGCGGCCACTGTCTTCAGCGTCGGAGT10.7407407407407408No Hit
CCCTAATGAAACACCTGGCCCCTGAGAACAAAGTCCATCCTGTCACTGTC10.7407407407407408No Hit
CACCCTACCTCGTCCTCCTCGATTCCCAACCCTTGCTAACATTAAGGAAA10.7407407407407408No Hit
CTTATACACATATGACGCTGACGACGAGAGGCTGCGTGTAGATATCGGGG10.7407407407407408No Hit
ACTTATACACATCTGAGGCGGCCGACGAAGCTGGCGGGGTAGAGCTCGGG10.7407407407407408No Hit
CACGCGCAAGACACGAATGGGGAATGGGGAACAGAAGCCGGTTACTTACT10.7407407407407408No Hit
GTTAAACCCGTCTGCCGTGGCCGCGGGGAAGGACGGTCACGCCCGTCTGG10.7407407407407408No Hit
TATTCTTGGTGGGAGGGTGGTTCCTGGCCGGCGCGCGGGCTATCTCTTCT10.7407407407407408No Hit
GCTATTAGAAGGATTATGGATGCGGGTGCTTGCGTGAGGAAATACTTGAT10.7407407407407408No Hit
TCCCAAGGGGCCCAGGACAAAGAGCCGTTCTAAGCGCTAACCGCAGCCTC10.7407407407407408No Hit
ACCACCCACAGCCTAATTATTAGCCTCATCCCTCCACTATTTTTTAACCA10.7407407407407408No Hit
GAGTAGGGCTGAGCCTGGGGTGGGGCCTTCTATGGCTGAGGGGAGTCCTG10.7407407407407408No Hit
GTATACTTGAGGAGGGGGACGGGCGGTGTGTACGCGCTTCAGGGCCCGGT10.7407407407407408No Hit
GGGGTGGCGGGCCCCGTCATCGGGTGCCGTTCAGCACGCGCACCTGCTCG10.7407407407407408No Hit
ATAATTTGGGAGAAGTTGTTGGAGGCAAGAATAGAGGGTAGTGTGATCGT10.7407407407407408No Hit
AATATACCACGGCGAACGCCTTAACCAGCACGATGCATAGCGAGGAGTAT10.7407407407407408No Hit
GTCTACGAGGGTCAAGGCTCTGAAATCTGTGGCACAAACCACGGTTTAAT10.7407407407407408No Hit
GGTTAGGTAGTTGAGGTCTAGGGCTGTTAGAAGTCCTAGGAAAGTGACAG10.7407407407407408No Hit
AACCCCTTGGGGGCCCCATGGATGAACGCAAGCAGACTGAGGGCGCTGCA10.7407407407407408No Hit
GAGTTTCATCGTCCAGAGGTGCTGGGGTGCCACGGGGAATGATAGTTGCG10.7407407407407408No Hit
GTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAGGTATTAGA10.7407407407407408No Hit
ACCTGGGGGTGGCACTAAATCATTGGTGGGGACGGTCCTTGCGCGGTCGT10.7407407407407408No Hit
CCACACAACTAGGAGAGTGTCCCCATCCGGTGAGACTTTGCAGACGGTGC10.7407407407407408No Hit
ATACACATCTGACGCTGCCGACGAAAATTTGCGTGTAGATCTCGGTGGTC10.7407407407407408No Hit
CCCGCGCAGGCGCAGCAGCAGGGTCACCTCGGGCTGCTTCCTGTCTCTTA10.7407407407407408No Hit
TTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCG10.7407407407407408No Hit
CTTATGCAAAAATGAAGCGGTCGACGGGAATGAGGGTGGAGGGAAAGGGG10.7407407407407408No Hit
ACTGGGTGAAATGCGACACCATTAGCTGAGACTGAAACTGTCTCTTATAC10.7407407407407408No Hit
ATCTGTGGTTAGGTGGTGGAGGTGGTAGGTGAAGTAGTGGATGTGTTGCG10.7407407407407408No Hit
ACAACCATGCCGCCAGTCAGCGACCTGATGAGAAAACCAGGGGATTGCGA10.7407407407407408No Hit
GACTCTACTGGTCTGCCGCGGCCGACGGCCAGGCCCGTGGAAGCCCCGCC10.7407407407407408No Hit
CTGATAGGGTGTGGTGGCTGCCGATGTGGCTGGTTGGGGAGGGCTGCTGG10.7407407407407408No Hit
TGTGGATTTCGGTTCTAGGAGGGACTTTTGGGTTTCTTTGCCATTTTTCG10.7407407407407408No Hit
ACGCAGTTCCCGTAATTCCCGGGCCCCGCACTTCCGTTGTCTCTTCTACA10.7407407407407408No Hit
CTTCTACACATCTGATGCTGCCGACGCGAACGGCTGCGTCGCCCTCGTGC10.7407407407407408No Hit
CCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAA10.7407407407407408No Hit
GATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAA10.7407407407407408No Hit
GCTATAGTGACCATCGATAGTATTCTTCCTTCTAGGCATAGTTGGGCGGA10.7407407407407408No Hit
ACAGGAAGGGAGTAAGACAGGGCAGTAGATAAGGGCCCCACCAGCTCGGC10.7407407407407408No Hit
CTTTAAACATATGCCGCTGCCGACGGCTAAGGGCCTGTCTCTTATACACA10.7407407407407408No Hit
TTGTCTCGGCCGCAAGCAGGCCCCGGGGGAGAACATCCCGCGCAGTCGTG10.7407407407407408No Hit
GCCTATCGCAGCGTGTGCGCTCCATCGGGCAGGGCGGTGACTGTCTCTTA10.7407407407407408No Hit
TCGGGGGAAGAAAGAAAAGGACGCAACCTAATTATAGGGCTTAAGAAAAC10.7407407407407408No Hit
ACGATGGCCATCTGCCGCTGCCGCCGGCCATGCCCGGCTAGGGCGCGGGG10.7407407407407408No Hit
GTAGCTTACCTCCTCACAGCAATACACTGAAAATGTTTAGACGGGCTCAC10.7407407407407408No Hit
CTTATACACATCTGACGCTGCCGACGAGGGGCGGCGTGTAGATCTCGGTG10.7407407407407408No Hit
GCTACCTCGTTTGGGTAACTGGACCTAAACTCTATTTATATTTTAGATAG10.7407407407407408No Hit
GGTCCAGTGGACGGCCGGCACCGCCGCCGGTCCGATGGGGGCCTTCGGCG10.7407407407407408No Hit
GGATTGGGGTACGGGAGGGAGAAGGGGGGGTGTGTGGGGAGGGAGGGGGA10.7407407407407408No Hit
CACCTATCGTACCCCTTCCATGTACTATCCCTATGAGGCATAATTATATC10.7407407407407408No Hit
GGTAGGATAAGAATATAAACTTCAGGGTGACCGAAAAATCAGAATAGGTG10.7407407407407408No Hit
GACGCGGGGGCGTGTGGGTGGGATCTCGGGCGGGAACAGGAGGGTGGGGA10.7407407407407408No Hit
CGCACGTGCTCATCTCCTACGACGAGGTCGGCGGCTACCCCCACCCGGAC10.7407407407407408No Hit
TGGTGTGGTGGGTGTGGGAGGGGGGGGGTGGGGTGGGGGTGGGTTGGTGA10.7407407407407408No Hit
ATTCTTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAG10.7407407407407408No Hit
GTGGTAAGAAGTGGGCTAGGGCATTTTTAATCTTAGAGCGAAAGCCTATA10.7407407407407408No Hit
GATTAGTAAAAGTTGGGGGCAACGTAGTCGATTCATTGAACGACAATCAC10.7407407407407408No Hit
TACAGATTGAACACTATTCCCGTCCTGCACAGCATTCAGAGCATGTCGTA10.7407407407407408No Hit
GGAGCTAGTTTCAGGACTAGTTGCCCACCAAGGCGCTTTCTGTGTTGCTC10.7407407407407408No Hit
TGATAAGTGAGCCCTCTGACTAGTTCAATAGTTAACCCGACAGAGCACAG10.7407407407407408No Hit
CTCTTATACACATCTGACGCTGCCGACGAACTTCTAGGTGTAGATCTCGG10.7407407407407408No Hit
GCTTGGCCCTCGCAGGAACTGGCGGTGCTTTGTGTCGCTCTGGCGGAGCG10.7407407407407408No Hit
ACATAGAAGGGTGCCGGGCTGGGGCAGCTCGGCTCCGATAAGGGGGCCTA10.7407407407407408No Hit
GTGATAGAGTTTGGATTAGGGGGCTCATTTCTGCTAGGTAGTGGACGAGG10.7407407407407408No Hit
CTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTAT10.7407407407407408No Hit
CCGTAGCGCTGCCCGTGGCCGATGCCCGCCACGTGCTGTCTCTTATACAC10.7407407407407408No Hit
CTTATACACATCTGACGCTGCCGACGAGGGCCGGGGTGTAGATCGCCGTG10.7407407407407408No Hit
CTTGTACACATCTGACGCTGCCGACGAACCTGGCGGTGCAGAGCGCGGGG10.7407407407407408No Hit
CACGTGTGCTGCCGCTGGTAATATTCGCCCCGGAACGGCTTCGAGAACCA10.7407407407407408No Hit
ATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAG10.7407407407407408No Hit
TCATGTGGTGAAGAGTTAGCGGAGAAATAGGAAGAGTACAGGTGGTGTGA10.7407407407407408No Hit
AGAGGTGCAATAGCTTTAAAAGTTAGTGTAAGCTGAGGGGTAGGGTAGAG10.7407407407407408No Hit
ACCCTAACATAACTATTCTTAATTTAACTATTTATATTATCCTAACTACT10.7407407407407408No Hit
TACACACCCTGAAGCACTAATATCTTACCTGACGTGTAACCAATTAAAAA10.7407407407407408No Hit
TCTTAATACACATCTGACGCTGCCGACGAAGTATGCAGTGTAGATCTCGG10.7407407407407408No Hit
GCATGAGACGGGCGACGATCCACGCCACGATCACCAGCAGCACCGGCACG10.7407407407407408No Hit
CGCTGTTTGAGGAAGTGGAACCTGGGCCTGTGAGTTATTGGGGTTGCTTG10.7407407407407408No Hit
CATCTCTGCCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAG10.7407407407407408No Hit
GTTCTACACACACCCCGCCCCTCACCACCGTCCCGCCCCGCGTCCCGCGG10.7407407407407408No Hit
GTCTGGGGCATGCGCCCATGGTAGGACCGACCCCGGACCTGTCTCTTATA10.7407407407407408No Hit
AGCCCGTGGGCGCCCGAGGAAGTCTTGCGGCGGCGGCCGTCTAGCCACAT10.7407407407407408No Hit
GGCCAGGCACGGGGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCTG10.7407407407407408No Hit
TGATACAGCGCGACAGTTCCCGTCTCAGACAACGGCGTGCGCCCCGTTGT10.7407407407407408No Hit
GCCCAGTGCTATGCCCCGGACACCGACTCCGCGCATCGCGGTGGGTCGCT10.7407407407407408No Hit
ATACACATCTGACGCTGCCGACGAGAGGCTGCGTGTAGATCTCGGGGGGC10.7407407407407408No Hit
ATCCAGATCTTACGTTTCCTAGGGGGTATGGGGTGGCTTTGGAGTTGCGG10.7407407407407408No Hit
GAGTGGCTTTGGGTGTCTTCGGAAGGGGCGTGTGGGTGGGCTTTGTCGTT10.7407407407407408No Hit
GACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCAT10.7407407407407408No Hit
CTGAGCGCATCTGAAGCTGGCGCCGAGGCGGGATGGGGGCACGTCGTAGA10.7407407407407408No Hit
GGCGACGAGCGCCTCGAGACCGGAGCCGGGGGCGCCGTCGGCCGGGTCCA10.7407407407407408No Hit
GAGTGGGGGTCGAGGGGCAATGATCCGGGGGCGCAGAGCGGGGGGGGCAG10.7407407407407408No Hit
AGTTAAGTCAGTCCTTAATGAACGCTGCGGTTATAAGACGGATAATTCAC10.7407407407407408No Hit
GTCTCTTATACACATCTGACGCTGCCGACGAGAGGCGGCGTGAAGCTCGG10.7407407407407408No Hit
ATTTGACACAGCCGACGCGGGCCGGGGTATAGGGCCTGGAGGGCGCGGTG10.7407407407407408No Hit
CAGCACTTGCCCACGGCTAAGCAGGAGAGGTTACCACATGTGCAAAGTAT10.7407407407407408No Hit
CTTAACACATCTGACGCTGCCGACGAGAGGCTGCGTGTAGATCTCGGTGG10.7407407407407408No Hit
AGGTGACCGTGGCCCTCGACGGCGGTCAGCCCCGCCGCTGTCTCTTATAC10.7407407407407408No Hit
CTTATACACATCTGACGCTGCCGACGAATCTGGGGTGTAGATCTTGGTGG10.7407407407407408No Hit
GGGCATGAGTTAGCAGTTCTTGTGAGCTTTCTCGGTAAATAAGGGGTCGT10.7407407407407408No Hit
CAAATCCTCATGCGACGCTGCCCAGGAGGCACGTGGATCTGTGCTTCGTT10.7407407407407408No Hit
TGCCAGTTGTGGAAGTTGACGAGGAGGGCCGTGAAGTCTAGAGACTTGAC10.7407407407407408No Hit
TAAGTTTATTCATTTGTAGTGATCTGGTTGTATTAGAGCACTGTCTTGAT10.7407407407407408No Hit
AGATTTGGTCGGTGGAGAGGCGCGAGGGTGATTGTTGGGACTGGTGTGTG10.7407407407407408No Hit
GCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAA10.7407407407407408No Hit
TGTTGGTGTACAGGACCGGACTGCCGGTCCCGGAGACCTCACGGACGGGG10.7407407407407408No Hit
GCCTACGGCAGGGCGCCCAGCAGGTCGAAGAAGGCGGCGAGCCCCGTGCA10.7407407407407408No Hit
TGCCATACTAGTCTTTGCCGCCTGGGAAGCAGCGGGGGGCCTAGCCCTGT10.7407407407407408No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers