SRR1780661_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780661_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41630
Sequences flagged as poor quality	0
Sequence length	50
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTGACGCTGTCTCTTATACACATCTGACGCTGCCGACGA	76	0.18256065337497	No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATAAACTGGGTGTAGATC	70	0.16814797021378813	No Hit
CTTATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTG	67	0.1609416286331972	No Hit
GCGTCAGATGTGTATAAGCTGTCTCTTATACACATCTGACGCTGCCGACG	58	0.13932260389142445	No Hit
ATACACATCTGACGCTGCCGACGAGACCCAATGTGTAGATCTCGGTGGTC	44	0.10569300984866682	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGG	35	7.1653376E-6	37.681316	1
TAAGCGG	30	1.2862596E-4	36.634617	1
AGCCACG	50	5.6972567E-8	35.21155	27
ATCGGGC	25	0.0023230824	35.21155	27
CGTCAGA	25	0.002336862	35.169228	2
TTTACAC	55	1.3305544E-7	31.972029	2
CTTTACA	55	1.3305544E-7	31.972029	1
CAATGTG	35	3.1814398E-4	31.401098	32
CGGGTCG	30	0.005639742	29.378313	12
GATCGGG	30	0.005673108	29.342962	26
GAGCCAC	45	3.967979E-5	29.342962	26
CCGACGC	45	3.967979E-5	29.342962	18
GCCACGG	30	0.005673108	29.342962	28
GAGATCT	30	0.005673108	29.342962	39
GACGAAA	45	4.000788E-5	29.307693	23
GTCAGAT	30	0.0057066297	29.307692	3
TCAGATG	30	0.0057066297	29.307692	4
GCGTCAG	30	0.0057066297	29.307692	1
AGAACGG	40	6.904481E-4	27.509024	27
AATGTGT	40	6.904481E-4	27.509024	33