SRR1780650_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780650_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21453
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	828	3.8596000559362325	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	349	1.626812100871673	Illumina PCR Primer Index 10 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	126	0.5873304432946441	No Hit
ATAAAGAATATTGAGGCGCCATTGGCGTGAAGGTAGCGGATGATTCAGCC	66	0.3076492798210041	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	53	0.24705169440171537	No Hit
CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	52	0.24239034167715473	Illumina PCR Primer Index 10 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCT	31	0.1445019344613807	Illumina PCR Primer Index 10 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATATCGTATGCCGT	30	0.13984058173682	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	23	0.10721111266489534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGACT	15	0.0021951767	70.0	8
ACCTGCC	20	0.0068598553	52.500004	36
TTGAAAA	195	0.0	35.897434	58
CTTGAAA	195	0.0	35.897434	57
GCTTGAA	210	0.0	35.0	56
CTGCTTG	215	0.0	34.186047	54
TGAAAAA	195	0.0	34.102566	59
TATGCCG	220	0.0	33.40909	43
GAAAAAA	220	0.0	33.40909	60
CCGTCTT	220	0.0	33.40909	47
ATGCCGT	220	0.0	33.40909	44
TCTTCTG	220	0.0	33.40909	50
AGATTAT	220	0.0	33.40909	32
CGTCTTC	220	0.0	33.40909	48
TGCCGTC	225	0.0	32.666668	45
TCTGCTT	225	0.0	32.666668	53
GTCTTCT	225	0.0	32.666668	49
GCCGTCT	225	0.0	32.666668	46
TGCTTGA	215	0.0	32.55814	55
CGTATGC	240	0.0	32.083332	41