FastQCFastQC Report
Wed 25 May 2016
SRR1780643_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1780643_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107
Sequences flagged as poor quality0
Sequence length50
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCTACCGCTCCGAGATCGCCGGCGCGTTCGAGCGCGCCGCGGCCTA10.9345794392523363No Hit
GAGTCAGGGGTGGAGACCTAATTGGGCTGATTTGCCTGCTGCTGCTAGGA10.9345794392523363No Hit
TTCTGGCTGGTTGCCTCATCGGGTGATGATAGCCAAGGTTGGGATAAGTG10.9345794392523363No Hit
GGTAGGGGATGGTTGGATGATGAAATACAGACAATAGAAAAACCTAGATA10.9345794392523363No Hit
GTTCTTCCCATGAGTCGCTTCCACCTAAACTTGCGTCTTAGATCTAGCTC10.9345794392523363No Hit
GAGTAGGCGTTTTAGGCCCTTTGGTCGCAGAAGGATGCGCCCTTACACAC10.9345794392523363No Hit
TCCGCCGCCACCGGGACGAGGGCGACCGGCGGCGCGTGCTGGTCTGTCTC10.9345794392523363No Hit
GAGGTACTCGGCCATGGCGCCGAGGATCGCGGCCTTGCGCCTGTCTCTTA10.9345794392523363No Hit
CGGGCAGGATCAGCCGACCCTTCTCATCCAGCCGGGGAGCTGTCTCTTAT10.9345794392523363No Hit
GGACTGCCAGGGCGGGCGCCAGTCGGGGGCGGGGGAGGTCCTGTCTCTTA10.9345794392523363No Hit
TGAGAACACAGGCTAAGGGAGAAGAGGGAGGAATGGAGGGTGGAAGGTTA10.9345794392523363No Hit
GGGCTCGACGGCGTGGATTCAGTGGTCCCTGTCTCTTATACACATCTGAC10.9345794392523363No Hit
GTTTTCCATAGCAGATGTACTGTTTTACATTTCCACTTATGTCTGTCTCT10.9345794392523363No Hit
GGGGTAAGGAGGCTACAGGGCGGGAGTAGGTGGCTGGTAAGGGGGGGTGG10.9345794392523363No Hit
GCAGTCATTCTCATAATCGCCCACGGACTTACATCCTCATTACTATTCTG10.9345794392523363No Hit
CTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACC10.9345794392523363No Hit
CCCCATACCCAACCCCCTGTTCAAACTCAACCTAGGCCTCCTATTTATTC10.9345794392523363No Hit
CATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCC10.9345794392523363No Hit
GGCCCCCAGGCTGAATCGTAGTGGTGGGATCTTGGCTTATTACAAGCTCC10.9345794392523363No Hit
GCCCAGGCGCGCAGCATGGCGGCCTTCGCCGCGCGGTCCACGACCTGTCT10.9345794392523363No Hit
CGCGTGTTCCAGCCCATGGAGATGGTGGCGATGTTCTACTCCTGTCTCTT10.9345794392523363No Hit
ACCTAGAAGCCTCCTTCGCTATTAGCCATGTCACTAACATATTAACTGTC10.9345794392523363No Hit
GAGGAGTACATCGTGGCGCACGAGTACGGCCACCACGTTCAGCAGCTGTC10.9345794392523363No Hit
GTACTGTGCAACAGATAACTTAAAATGTGGAAAGTGAAACCAGGGATAAG10.9345794392523363No Hit
CTAGGAGGGTGTTGATTATTAAAATTAAGGCGAAGTTTATTACTCTTTTT10.9345794392523363No Hit
CTGGGGGAGCAGCAGACGCCGTGGCCGGGCACGCGGCTGTTCGTGGCGCC10.9345794392523363No Hit
GGACGTGACCGTGATCGGCGCGGGGACGCGAGTGGAGATCTGCTGTCTCT10.9345794392523363No Hit
CTTTACACATCTGTCGTTGCCGCCCAAACATCCGCAGAAGATCGCGGGGG10.9345794392523363No Hit
GGTCTGAGTTTATATATCACAGTGAGAATTCTATGATGGACCATGTAACG10.9345794392523363No Hit
CACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACCTGTCTCTTAT10.9345794392523363No Hit
GGGGATTAATTAGTANGGNNNGGGTATAACCAACATTTTCGGGGTATGGG10.9345794392523363No Hit
GGCCGTGACTCCGCCGGCCGATCGGACACCCTCATGTGGGTCCACGTGCC10.9345794392523363No Hit
GTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAAT10.9345794392523363No Hit
CTTGGCCACCTTGTCGATGGTGGTGACGCGGTTGTGCACGTACTGTCTCT10.9345794392523363No Hit
GCCCAGGTCCGGGCCGGTGAGCCCCAGGGGCTGTTCGGCGGTGTTGTGCC10.9345794392523363No Hit
GCAGAGGCCGGCATTGTGTGGGATCATTACATGCTTCCCCCCGTATTCCA10.9345794392523363No Hit
AGATAGGAGAAGTAGGACTGCTGTGATTAGGACGGATCAGACGAAGAGGG10.9345794392523363No Hit
CTCCTCCCGCGGCCAGCGGGTGCTCGAGCAGTTCCTGCACGTGGGTGCGG10.9345794392523363No Hit
ACTATCAACATTACTAATAAGTGGCTCCTTTCACCTCTCCACCCTTATCA10.9345794392523363No Hit
GCACGGTGATGTCCGTCTGGTGCCGCTCGAGCGGGCCGATGTGGTCCAGG10.9345794392523363No Hit
TGTGTAGGAAGAGGCAGATAAAGAATATTGAGGCGCCATTGGCGTGGAGG10.9345794392523363No Hit
TTGCTATAGTTGCAAGCAGGAGGATAATGCCGATGTTTCAGGCTGTCTCT10.9345794392523363No Hit
GCGGCGGGCTGGTGGCCCCGGTCGTGATCGTCATGCTGGCGGTCTTCTTC10.9345794392523363No Hit
ATATAGAGGAGACACCTGCTAGGGGTAAGGAGAAGTTGGTTAGGTCTACG10.9345794392523363No Hit
GTTTTATGGCGTCAGCGAAGGGTTGTAGTAGCCCGTAGGGGCTGTCTCTT10.9345794392523363No Hit
CCGCCGCGGGGACGAGGTCCGGGGCCCGGCCGACGTCGACGCCGCCTGTC10.9345794392523363No Hit
ATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCTGTCTCTT10.9345794392523363No Hit
CTCATTCATCCACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACT10.9345794392523363No Hit
GCGAGGTGCAGGCCCACGCCGTCGCCTACCTGCGCCTGTCTCTTATACAC10.9345794392523363No Hit
CCGCTGCGGGCCGTGCTCGTCGACGTCTACCGGGAGCTCGGCCTGGACAT10.9345794392523363No Hit
GGGCGGGCCGAGTCCTCCTTCTCGGCGGCGTAGCATACCCCTCAATTTCC10.9345794392523363No Hit
GCCCGCCGTCGAGGCCACCACCCCGCCGCCCTCCGTGTTGCCCGGATCAC10.9345794392523363No Hit
CCCTCGCCCAGGGCGGCGACGGTGCCGGACATCTCGGGGCCGAGCGTGAC10.9345794392523363No Hit
GGGAGACGGCCGTCTGCCGGCCCTGGGGGTCCGGGGCGACCATCGGCCCT10.9345794392523363No Hit
AGCCGCAGCAGCGCGTCGGGGCCGTCGGCGTCGGGGAAGCCCTGGCCGAG10.9345794392523363No Hit
GGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGAT10.9345794392523363No Hit
CAGCTAACTGTCGGTCGGTGCCGCAGGGAAGCAAGGAGGAGATCTGTGTG10.9345794392523363No Hit
CAGCGGGGACGCGCGCTGACGCGCACGACGGTGGTGCTGTCTCTTATACA10.9345794392523363No Hit
CTTATACACATCTGACGCTACCTACGAGAGGCTGCGTGTAGAGTTTTGTG10.9345794392523363No Hit
GGCCGGGGGTCAGGTGTATCTGGGCTTGCATCCCTACTCAGCCTGGTGAC10.9345794392523363No Hit
ATACCGCGGGCGTGGGGCATCTTCAGCCTGTCTCTTATACACATCTGACG10.9345794392523363No Hit
GGTCGACCCCGAGGGCGCCCGGGCGCTCGCGGGGCGGCCTGTCTCTTATA10.9345794392523363No Hit
CTGTCTCTCCCCACACCCACCTCAGGCCTCGGTAAGAGGCACCGCCCCTC10.9345794392523363No Hit
GATCCCGCGTGCGGTGAGTTCCGCGACCAGCTCGTCCACGGCCGCCGACT10.9345794392523363No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT10.9345794392523363No Hit
TTTCCCACCCCCCCACGGCGCCGCGAACCCCCCCGGCTCTCTCGGCCCGC10.9345794392523363No Hit
GCGCTACGGCTACCGCGTGCACGGCCCCTGGGCTGTCTCTTATACACATC10.9345794392523363No Hit
GGCTAGGGCCCGCGCGCCGCCCCCCGGTCTGGGCGTCCCCGGCTGACGAC10.9345794392523363No Hit
CTTATACACATCTGACGCTGCCGACGAAGCTGGCGGTTTAGATTTAGGTG10.9345794392523363No Hit
GAGCGGAGGAGGCCCACGCCGTCGCCTACCTGCGCCTGTCTCTTATACAC10.9345794392523363No Hit
GACAACCACTACCCCGATCTCGAGGCCGAGGCGCATCGACCTGTCTCTTA10.9345794392523363No Hit
CGCCACAAACCTCCCCCCCCCCCCCACCCACCCCCCCATCCCCCCCCTAG10.9345794392523363No Hit
GGCCGGAGTAGAACACCGTGGTGTTCTTGGCGAGGATCGTGACTGTCTCT10.9345794392523363No Hit
AGTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCG10.9345794392523363No Hit
CCTCCCGGGCAGCACAGGCGGTCGGTGCAGAGACCGGGGCCCGACCCCGC10.9345794392523363No Hit
GCGTCGTCGTCCTCGGAGCTGGCACCATGGGCTCGCAGATCGCGGCCTGT10.9345794392523363No Hit
GTCTCATTCCCTACCTCACCTCCACCAAAGAAAGAAATTGGTTTTTACCT10.9345794392523363No Hit
GGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGT10.9345794392523363No Hit
ATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTG10.9345794392523363No Hit
CCTCTGCCACGTTCGAAAGAGCGTCGGGCGCGCCACCCGTCAGGCGCTGT10.9345794392523363No Hit
GCCCTACTACGTGCACCCGGCCGGGGCCGGGGACGGCGAGGGGCCTGTCT10.9345794392523363No Hit
GTAGCGATGAGAGTAATAGATAGGGCTCAGGCGTTTGTGTATGATATGTT10.9345794392523363No Hit
GTGGGGCAGCCGCAGCGCCTTCTTGGGGAAGCGCGCGCCCTGTTAATTAA10.9345794392523363No Hit
ACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACT10.9345794392523363No Hit
GTGCACAGACAGCCGGGCTGAGCCCCACCCCGCCCAGCCGCATGCACCAT10.9345794392523363No Hit
CGCGACCGCTCCGGGCCCCACCGCAGTACCGTCACGGTGGCTCACTGGTT10.9345794392523363No Hit
GCCTGACAATGCGCCACCACACACACCACCCAGCTCTCTCTAAGCTTCAA10.9345794392523363No Hit
ATCAAAGACGCCCTCGGCCTGTCTCTTATACACATCTGACGCTGCCGACG10.9345794392523363No Hit
CTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACCTGTCTCTTA10.9345794392523363No Hit
CCCGCTCCCTGGCCAACATCCACCGGGAGCTGCACGACGACCTCGGCATC10.9345794392523363No Hit
GGTCTAGGAGGAGTAGGGGCAGGTTTTGGCTCGCGAGAAGGCCTAGATAG10.9345794392523363No Hit
TCTTATACACATCTGACGCTGCCGACGAATCTGGCGGTGTAGATCTCGGT10.9345794392523363No Hit
AATGGTATTTCTAGTTCTAGATCCCTGAGGAATCACCACTCTGATTTCCA10.9345794392523363No Hit
GAGCCGGTCTCCCTGAGAAAACTTGCGCCATTCGTCCAGCCGGTGGTGCC10.9345794392523363No Hit
TCCTCGCCCTCCTGCGGCTCGGCGAGGGCGATCTCCTCGAGCGCTGTCTC10.9345794392523363No Hit
ATGCTGTTCGAATTCATAAGAACAGGGAGGTTAGAAGTAGGGTCTTGGTG10.9345794392523363No Hit
GACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGG10.9345794392523363No Hit
TCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACCATACTACTAACAG10.9345794392523363No Hit
CAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTATACGAATGGGG10.9345794392523363No Hit
GATAGGAGTTAATTCTGGATGGATGGGACACAGGCCTCTTGACCAAGGAG10.9345794392523363No Hit
GCCCTGGGCCTGGCAGTTAAAGATCGACCTCTGACCTAACCGGTTATGTT10.9345794392523363No Hit
GCTGCCCGGTGCGCCCGTAGGCCGCCAAGGAGCGGGCGAAGTAGCCCGAT10.9345794392523363No Hit
CTTATACACATCTGACGCTGCCGACGAATCTGGCGGTGTAGATCTCGGGG10.9345794392523363No Hit
GTGGATGTAGGCGTCCAGCGACTCGGCGCCGTGCTCGCGGATCCCCAGGT10.9345794392523363No Hit
GAGTAGGCTGATGGTTTCGATAATAACTAGTATGGGGATAAGGGGTGTAG10.9345794392523363No Hit
GGGGCAGGTTTTGGCTCGCGAGAAGGCCTAGATAGGGGATCTGTCTCTTA10.9345794392523363No Hit
CCTTCTCGAGCGCCGCCGTCGCGGACTGCAGCGACGAGTAGAACCTGTCT10.9345794392523363No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers