SRR1780629_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780629_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49
Sequences flagged as poor quality	0
Sequence length	50
%GC	58

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	2	4.081632653061225	No Hit
AATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGAGCCCACGAG	2	4.081632653061225	No Hit
ATGCACGTGCGTGCGCGCGCGCGCACACACACACGCTTTGCTCTTCCACA	1	2.0408163265306123	No Hit
CTCAAGGACAGGGTGAGCGCGGAACCACCATAGGAGATGAAGGGCAGGGG	1	2.0408163265306123	No Hit
GAGTGAGGCTCCCAGTCCACCGGCACGTAATGTGCGCTCACGGGTGCCTG	1	2.0408163265306123	No Hit
ATCTCCGAGCCAACGAGACATGATGATATCTCGTATGCCGTCTTCTGCTT	1	2.0408163265306123	RNA PCR Primer, Index 25 (96% over 28bp)
GATCTGACTGGCTCTGCGGCGTGTGATTTTGAGCTCTCCATCACACTTAG	1	2.0408163265306123	No Hit
CTTATACACATCTCCGAGCCCACGAACCGGTTCCCATCTCGTATGCCGTC	1	2.0408163265306123	No Hit
GAGGAAGAAGGGAGAGGGGACATGAGGCATTTTTTTTGGTTTGTTTTTGC	1	2.0408163265306123	No Hit
ACCGTGAGCTTCTACTGCCGGGCGCGGGCGTTCTTCGCCGCCCACGGCAT	1	2.0408163265306123	No Hit
ATCCCGGCTCTCGCGGGGGCCGGCGTCGAGGTAGAGCTGTCTCTTATACA	1	2.0408163265306123	No Hit
CGTCCAGCGCGCCCGCGTCCTCGCACGGCTGGCACCCCGGCTGGCCGGCA	1	2.0408163265306123	No Hit
CACGCGGCCTGCGGACCGTAGACGCTGTCGTGGGCCTGTCTCTTATACAC	1	2.0408163265306123	No Hit
CATCCTCGCCTTAGCATGATTTATCCTACACTCCGAGCCCACGAGACTTC	1	2.0408163265306123	No Hit
GACCATACCTATGTATCCAAATGGTTCTTTTTTTCCGGAGTAGTAAGTTA	1	2.0408163265306123	No Hit
AGGTGACGCTCACGGTCGTGGCGGGGCCCCCCCGCGCGGGCTGTCTCTTT	1	2.0408163265306123	No Hit
GCGCAGCAAGGCATACAAGGCGGCCAAGGCCGCGATCGGCGATGATCTGT	1	2.0408163265306123	No Hit
GTGATGTTCTGGGCCTGGCTGCGCCTGGGCCAGACCTGTCTCTTATACAC	1	2.0408163265306123	No Hit
GCATACATCATTATTCTCGCACGGGCTACAACCACGACCAATGATATGAA	1	2.0408163265306123	No Hit
GGCCTGATCGGCCTGCTGCACCGCCGGTGGGTGATCCCCCGCCTCGACGC	1	2.0408163265306123	No Hit
GGCGTGGAGAGGATGGCGCGCGGCTGGAAGTCGGTGATCAGCTGCACCTG	1	2.0408163265306123	No Hit
TCCTTATACACATCTCCGAGCCACGAGACATGATGATATCTCGTATGCCG	1	2.0408163265306123	No Hit
ATCTCCGCCCACGAGACATGATGATATCTCGTATGCCGTCTTCTGCTTGA	1	2.0408163265306123	TruSeq Adapter, Index 25 (96% over 29bp)
TCCGGGAAGGGGGAGGCCTCGCGGAACGCCAGCTGCAGCGAGCGCAGGCC	1	2.0408163265306123	No Hit
TCTCCGAGCCCACGAGACGGTAAACCATCTCGTATGCCGTCTTCTGCTTG	1	2.0408163265306123	RNA PCR Primer, Index 36 (96% over 28bp)
GCCCGAGATCGGCAGCCAGCACGCCGGCCCGCTGCGCCTGTCTCTTATAC	1	2.0408163265306123	No Hit
CTTATACACATCTCCGAGCCCACGAGAATGATGATATCTCGTATGCCGTC	1	2.0408163265306123	No Hit
CGCTTTGACTGGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTG	1	2.0408163265306123	No Hit
AAATTATAACAAACGGTCTCTCAGACCACAGTGCAATCAAACTAGAACTC	1	2.0408163265306123	No Hit
CTGCTGCTCTTGCCACTGACTTCTAGCACTGTTTCTCTAGGGCTGTCTCT	1	2.0408163265306123	No Hit
TTTGGTTTCCCAGTCCACATCTCCGAGCCACGAGACAAACGGTCATCTCG	1	2.0408163265306123	No Hit
CCATGTCCGTCAGCGCGAAGTTGGTGACGTCCGCGAGGCGGGAGAGCTCC	1	2.0408163265306123	No Hit
ATATCCAGCAGGGGTCCCTCAGGAGGCGGAAGTGGATAGGTGATATCCCT	1	2.0408163265306123	No Hit
GCGATGGCCTGCGGGGGCCGTGCGCGGTGCCGTCCGCGGCGGGCGGGGCG	1	2.0408163265306123	No Hit
GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGT	1	2.0408163265306123	No Hit
CCCCAGGAACGTGGCCGAGAGCTTGGAGTGGGAGATGTCCAGGCACAGCG	1	2.0408163265306123	No Hit
ACGCCGTGGTCCTCCGACTCCCCCGGCTCCGTGATCTCCAGCCGCCCTCC	1	2.0408163265306123	No Hit
TCCCAGAAGGACCCCCGATGACCCACCGCAACCCCTGTCTCTTATACACA	1	2.0408163265306123	No Hit
CTCCGCGGACCAGCGGCGGCCGGCCAGGTCCTTGAGGCTGTCTCTTATAC	1	2.0408163265306123	No Hit
TCTCCACCCTGCAGCAGACCGCCGCCACGAACATCGGCTGTCTCTTATAC	1	2.0408163265306123	No Hit
ATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAA	1	2.0408163265306123	No Hit
CTTATACACATCTCCGAGCCCACGGGACTTTAATGCATCTCGTATGCCGT	1	2.0408163265306123	No Hit
GTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCT	1	2.0408163265306123	No Hit
TCCGTGTGCATCGCGGGGACGGAGCTGCGGTGCCGGGTCACGGTCTTCAC	1	2.0408163265306123	No Hit
AAATAAACCCTCGTTCCACAGAAGATGCCATCAAGTATTTCCTCACGCAA	1	2.0408163265306123	No Hit
GGATTTTACCCTGTTGGCCTTGAACTGCTGACCTCATGTAATCCACCTGC	1	2.0408163265306123	No Hit
GTTCTTCGCTGATCTGGTCGCCCGCGGCCTTCACGGGGTGAGACTGGTGC	1	2.0408163265306123	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary